Citrus aurantifolia transcriptome-HLB infected leaves

Overview


Analysis Name	Citrus aurantifolia transcriptome-HLB infected leaves
Method	TruSeq, Illumina (TransFlow)
Source	PRJNA574168
Date performed	2020-03-03

This data is from Arce-Leal ÁP, Bautista R, Rodríguez-Negrete EA, Manzanilla-Ramírez MÁ, Velázquez-Monreal JJ, Méndez-Lozano J, Bejarano ER, Castillo AG, Claros MG, Leyva-López NE. De novo assembly and functional annotation of Citrus aurantifolia transcriptome from Candidatus Liberibacter asiaticus infected and non-infected trees. Data in brief. 2020 Apr; 29:105198. The data used for the transcriptome assembly and expression experiment are under NCBI BioProject PRJNA574168. Expression values are read counts.

Expression Data BioSamples, each sample was analyzed with two software (DESeq2 and EdgeR):

Sample	Tissue	Treatment
Healthy_8WPI_C_aurantifolia_1-DESeq2	Leaves	Mock-inoculated 8 WPI 1
Healthy_8WPI_C_aurantifolia_1-EdgeR	Leaves	Mock-inoculated 8 WPI 1
Healthy_8WPI_C_aurantifolia_2-DESeq2	Leaves	Mock-inoculated 8 WPI 2
Healthy_8WPI_C_aurantifolia_2-EdgeR	Leaves	Mock-inoculated 8 WPI 2
Healthy_16WPI_C_aurantifolia_1-DESeq2	Leaves	Mock-inoculated 16 WPI 1
Healthy_16WPI_C_aurantifolia_1-EdgeR	Leaves	Mock-inoculated 16 WPI 1
Healthy_16WPI_C_aurantifolia_2-DESeq2	Leaves	Mock-inoculated 16 WPI 2
Healthy_16WPI_C_aurantifolia_2-EdgeR	Leaves	Mock-inoculated 16 WPI 2
HLB_8WPI_C_aurantifolia_1-DESeq2	Leaves	CLas inoculated 8 WPI 1
HLB_8WPI_C_aurantifolia_1-EdgeR	Leaves	CLas inoculated 8 WPI 1
HLB_8WPI_C_aurantifolia_2-DESeq2	Leaves	CLas inoculated 8 WPI 2
HLB_8WPI_C_aurantifolia_2-EdgeR	Leaves	CLas inoculated 8 WPI 2
HLB_16WPI_C_aurantifolia_1-DESeq2	Leaves	CLas inoculated 16 WPI 1
HLB_16WPI_C_aurantifolia_1-EdgeR	Leaves	CLas inoculated 16 WPI 1
HLB_16WPI_C_aurantifolia_2-DESeq2	Leaves	CLas inoculated 16 WPI 2
HLB_16WPI_C_aurantifolia_2-EdgeR	Leaves	CLas inoculated 16 WPI 2

Properties

Additional information about this analysis:


Property Name	Value
Data source file	public://expression/6018816b28ccb_Normalized_counts_CLas-inoculated-forCGDupload.txt
Analysis Type	transcriptome

Links