Fortunella hindsii genome v1.0 | Citrus Genome Database

Overview


Analysis Name	Fortunella hindsii genome v1.0
Method	PacBio Sequel, 10x Genomics Chromium (Assembly with Mecat)
Source	Huazhong Ag. Univ.
Date performed	2020-12-18

About the assembly

For this genome, please cite Zhu et al, Genome sequencing and CRISPR/Cas9 gene editing of an early flowering mini citrus (Fortunella hindsii). This data was downloaded from the Citrus sinensis Annotation Project website. This data is also on NCBI under BioProject PRJNA487160, listed BioSample cultivar designation is Hongkong kumquat. Manuscript identifies accession S3y-45 as the sample that was sequenced.

Assembly metrics

Assembly size	374 Mb
Number of scaffolds	1,226
N50	2,209,464 bp
Predicted transcripts	52,686
Annotated genes	32,257
Assembly BUSCO score (embryophyta_odb10)	98.8%
Annotation BUSCO score (embryophyta_odb10)	96.6%

Downloads

To download the genome assembly and annotation files, please visit the CGD Data Repository.

Homology Analysis:

The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab. Results were parsed into an Excel format.

Homology Analysis: F. hindsii v1.0 Proteins vs. Swissprot
Homology Analysis: F. hindsii v1.0 Proteins vs. TrEMBL

Links