Citrus sinensis cv. Neixiu genome v1.0
Overview
About the assembly For this genome, please cite Yang L, Deng H, Wang M, Li S, Wang W, Yang H, Pang C, Zhong Q, Sun Y, Hong L. A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. Scientific data. 2024 May 06; 11(1):460. The assembly was originally downloaded from NCBI and the annotation from Figshare. Assembly metrics
Assembly
The Citrus sinensis cv. Neixiu genome v1.0 assembly file is available in FASTA format. Downloads
Gene Predictions
The Citrus sinensis cv. Neixiu v1.0 genome gene prediction files are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotation for the Citrus sinensis cv. Neixiu genome v1.0 are available for download below. The Citrus sinensis genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Homology
Homology of the Citrus sinensis cv. Neixiu genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2024-03), and UniProtKB/TrEMBL (Release 2024-03) databases. The best hit reports are available for download in Excel format. Protein Homologs
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