FC869021

Overview
NameFC869021
Unique NameFC869021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 71/184 (38.59%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  109 SIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 642
            S++  +  I N+ ++E LA + L K  + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D++T +LG ++ +P  ++ TA  K+ +P EGE           T     I TL+S +   + E + +   I+++QLYV  DR +   LVK  E+ G KA+ +TVD P LG+RE D+K +F
Sbjct:  194 SLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKF 377          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.678e-28
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 672
            +++A A+++L K  +D+    A+D  T  +N  AF RI  RPR LRDVSKID  TT+ G  I+ PI I+PTAF  +A  +GE               +SS+A+ +VE++ +  P G+ +FQLYV  D +++ Q+V+R E  GFKA+ +TVD P LG R  + ++   L  ++ LK+
Sbjct:    8 DFKAQAQKQLSKTSWDFIEGEADDGITYNDNLAAFRRIRLRPRYLRDVSKIDTRTTIQGQEINAPICISPTAFHSIAWADGEKSTAKAAQKANICYVISSYASYTVEDIVAAAPGGLHWFQLYVQPDWDINKQMVQRIEALGFKALVVTVDAPVLGNRRGNKRSLLDLEANIKLKD 183          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD2_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 2 OS=Mycobacterium tuberculosis GN=lldD2 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 67/194 (34.54%), Postives = 102/194 (52.58%), Query Frame = 1
Query:   91 SRKPSDSIMTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 669
            +R   D+    +     + +   +AK + P+  +DY   GAED+ ++   R  F  I F P ILRDV+ +     VLG    +P  IAPT F ++ H EGE          G   +LS+ AT ++E++    P G ++FQLY+ +DR+    LV+R   AGF  + +TVD P  G R  D++N   +PP LTL+
Sbjct:   20 NRPQFDTSKRRLGAALTIQDLRRIAKRRTPRAAFDYADGGAEDELSIARARQGFRDIEFHPTILRDVTTVCAGWNVLGQPTVLPFGIAPTGFTRLMHTEGEIAGARAAAAAGIPFSLSTLATCAIEDLVIAVPQGRKWFQLYMWRDRDRSMALVRRVAAAGFDTMLVTVDVPVAGARLRDVRNGMSIPPALTLR 213          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  139 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 669
            NV +Y  L +++LPKMVYDY   GAED++ ++ NR+ F +  F+P+ L DVS+  +   VLG   SMP++I PT       P+G+          G    LS+ +  S+E+++    G  +FQLYV   R +   +V +A   G+  + LT D    G RE D+ NRF +P   + K
Sbjct:    7 NVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPMSYSAK 182          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_PSEFS (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas fluorescens (strain SBW25) GN=lldD PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y A A+ KLP+ ++DY   GA  + T++ N +  + I  R RILR+V  + + TTV G  + MP++++P     M    GE          G    LS+ +   +EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSASDYRAAAQRKLPRFLFDYIDGGAYAEHTMRANSSDLAEISLRQRILRNVDNLSLKTTVFGQELDMPVILSPVGLTGMYARRGEVQAAKAAANKGVPFCLSTVSVCPIEEVASQSARAIWFQLYVLKDRGFMRNALERAQAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y A AK KLP+ ++DY   GA  + TL+ N +  + I  R R+L++V  + + T + G +++MPI+++P     M    GE               LS+ +  S+EEV+S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSASDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYVLKDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI 630
            +Y A AK KLP  ++ Y   G+ D+ TL+ N +    +  R R+LRD++ + + T + G  ++MPI +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D+
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYDERTLKRNTDDLGDVALRQRVLRDMTDLSLETEIFGEKLAMPIALAPVGLTGMYARRGEVQAAKAAEKKGIPFTMSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMKNVLERAKAAGVTTLVFTVDMPVPGARYRDM 168          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 55/165 (33.33%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y A AK +LP  ++ Y   GA  ++TL+ N    S I  R ++LR+V+ + + T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV S      +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSPNDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLYVLKDRGFMRNALERAQAAGINTLIFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y   A+ +LP  ++ Y   GA  + TL+ N    S +  R R+L+ V ++D++TT+L   +SMP+ +AP     M    GE          G   TLS+ +  S+EEV S      +FQLYV KDR      ++RA  AG + +  TVD P  G R  D
Sbjct:    3 ISSSSDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLYVLKDRGFMKNALERAWAAGIRTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +++  ++   A+ +LP+ ++DY   GA  + T+  N +  + I  R R+L DVS +D +TT+ G   ++P+ +AP     M    GEC         G    LS+ +   V+EV +      +FQLYV +DR     L+ RA  AG   +  TVD P  G R  D
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
CYB2_YEAST3.059e-3038.59Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
HAOX2_MOUSE1.678e-2839.20Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
LLDD2_MYCTU1.571e-2634.54Putative L-lactate dehydrogenase [cytochrome] 2 OS... [more]
MDLB_PSEPU1.470e-2435.59(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
LLDD_PSEFS1.987e-2133.94L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEU22.869e-2033.33L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_VIBPA1.424e-1932.92L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_AZOC51.424e-1933.33L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_XANP23.173e-1933.94L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_CAUCR5.412e-1931.52L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]

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Properties
Property NameValue
Genbank descriptionC31007F09EF AbioticL1 Citrus clementina cDNA clone C31007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869021 ID=FC869021; Name=FC869021; organism=Citrus clementina; type=EST; length=738bp
GACTCTCTCTTCCTTCAGTCTTCATTTCCCAGTTTCTGACTTTATTGCTT
TGCGCTCCCTTCACTGATTCATTTCTGCTTCTTTTGTTGTTCAAGGAAGC
CAAGCGATAGCATTATGACTTATATATCGGAGATCACCAATGTTATGGAG
TATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTA
TGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCAT
TCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATT
GACATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGAT
TGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAA
CAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGG
GCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTT
TTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAA
AAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACT
CCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCC
GCCACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGG
ATAAGACTGATGACTCTGGATTAGCTTCGTATGTTGCC
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