FC869021

Overview
NameFC869021
Unique NameFC869021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 53/166 (31.93%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y   AK +LP  ++ Y   GA  + T++ N      +  R RILR V ++D++  +    +++PI++AP     M    GE          G   TLSS +  S+ EV +  G G  +FQLYV KDR     +++R+  AG + +  TVD P  G R  D
Sbjct:    3 ISSTFDYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGF-WFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_ACTPJ (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lldD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y   A+ ++P  ++ Y   G+  + TL+ N    + +  R R+L+D+S++D    + G  ++MP ++AP     M    GE          G   TLS+ +   +EEV++      +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSTNDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y   A+ ++P  ++ Y   G+  + TL+ N    + +  R R+L+D+S++D    + G  ++MP ++AP     M    GE          G   TLS+ +   +EEV++      +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSANDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I++  +Y   A+ ++P  ++ Y   G+  + TL+ N    + +  R R+L+D+S++D    + G  ++MP ++AP     M    GE          G   TLS+ +   +EEV++      +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISSANDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_HAEDU (L-lactate dehydrogenase [cytochrome] OS=Haemophilus ducreyi GN=lldD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI 630
            I +  +Y   A+ ++P  ++ Y   G+  + TL  N +  + +  R R+L+D+S+++    + G  ++MPI++AP     M    GE          G   TLS+ +   +EEV+       ++QLYV KDR     +++RA+ AG   +  TVD P  G R  D+
Sbjct:    3 IASANDYREAARRRVPPFMFHYADGGSFSERTLARNVSDLADLALRQRVLKDMSQLNTEIELFGEKLAMPIVLAPVGALGMYARRGEVQAAQAAENKGLPFTLSTVSVCPIEEVTPAIKRPMWYQLYVLKDRGFMKSVLERAKAAGCSTLVFTVDMPTPGARYRDL 168          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 49/167 (29.34%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  151 YEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLYVTKD--RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 642
            +E LA E++ K    Y    A  + T  +N  +F +    P  L      D++TTV G     PI +AP   QK+ +PEGE               +S+ + +S E++  ++GPG R++QLY   +  +++   L+ RA++ G + + +T+DT  LG R +D+ N +
Sbjct:   39 WEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGY 205          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 52/180 (28.89%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEG--ECXXXXXXXXXGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIK-NRFVLPPHLTLKNY 675
            ++EA A++ LP  V  Y A G+ D+ T + N  AF      PR+L   ++ D++  + G   + P+  AP     +   +G  +          G     S+ A SS+E++    G    +FQLY  +DR++    ++RAE AG+  + +T+DT   G R  D+  + F     L L NY
Sbjct:   29 DWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDLTISNFPFLRGLCLTNY 208          
The following BLAST results are available for this feature:
BLAST of FC869021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_BARQU1.128e-1631.93L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_ACTPJ1.128e-1629.70L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP71.128e-1629.70L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP21.128e-1629.70L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_HAEDU3.283e-1628.92L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
YKN3_SCHPO3.397e-1329.34Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LA2M_MYCSM3.397e-1328.89Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007F09EF AbioticL1 Citrus clementina cDNA clone C31007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869021 ID=FC869021; Name=FC869021; organism=Citrus clementina; type=EST; length=738bp
GACTCTCTCTTCCTTCAGTCTTCATTTCCCAGTTTCTGACTTTATTGCTT
TGCGCTCCCTTCACTGATTCATTTCTGCTTCTTTTGTTGTTCAAGGAAGC
CAAGCGATAGCATTATGACTTATATATCGGAGATCACCAATGTTATGGAG
TATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTA
TGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCAT
TCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATT
GACATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGAT
TGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAA
CAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGG
GCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTT
TTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAA
AAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACT
CCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCC
GCCACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGG
ATAAGACTGATGACTCTGGATTAGCTTCGTATGTTGCC
back to top