FC869021

Overview
NameFC869021
Unique NameFC869021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +++  ++   A+ +LP+ ++DY   GA  + T+  N +  + I  R R+L DVS +D +TT+ G   ++P+ +AP     M    GEC         G    LS+ +   V+EV +      +FQLYV +DR     L+ RA  AG   +  TVD P  G R  D
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  148 EYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            +Y A A+ KLP  ++ Y   GA  + TL+ N    + I  R RILR++S + + T++ G  ++MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG K +  TVD P  G R  D
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALTI (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhi GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISATSDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC869021 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  133 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 627
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC869021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_CAUCN5.412e-1931.52L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_SERP57.068e-1933.75L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_SALTY9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALTI9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPK9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPC9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPB9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALHS9.231e-1932.12L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionC31007F09EF AbioticL1 Citrus clementina cDNA clone C31007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869021 ID=FC869021; Name=FC869021; organism=Citrus clementina; type=EST; length=738bp
GACTCTCTCTTCCTTCAGTCTTCATTTCCCAGTTTCTGACTTTATTGCTT
TGCGCTCCCTTCACTGATTCATTTCTGCTTCTTTTGTTGTTCAAGGAAGC
CAAGCGATAGCATTATGACTTATATATCGGAGATCACCAATGTTATGGAG
TATGAGGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTA
TGCATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCAT
TCTCTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATT
GACATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGAT
TGCTCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAA
CAGCAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGG
GCCACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTT
TTTCCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAA
AAAGAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACT
CCAAGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCC
GCCACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGG
ATAAGACTGATGACTCTGGATTAGCTTCGTATGTTGCC
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