FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.391e-43
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT +M+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE            PNDES AN+DA+K WR+ +++F K   + V+KSL
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKSL 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT +M+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE            PNDES AN+DA+K WR+ +++F K   + V+KSL
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT +M+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE            PNDES AN+DA+K WR+ +++F K   + V+KSL
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT +M+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +VE            PNDES AN+DA+K WR+ +++F K   + V+KSL
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 515
            L + PV+GF   LVDES+++ W V+I GPP+TLYEGG+F A + FP +YP SPPT RF +KMWHPN+Y +G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++WR+ K +  K+ +  +RK +
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQV 169          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 515
            L + PV+GF   LVDES+++ W V+I GPP+TLYEGG+F A + FP +YP SPPT RF +KMWHPN+Y +G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++WR+ K +  K+ +  +RK +
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQV 169          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.442e-38
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 515
            L + PV+GF   LVDES+++ W V+I GPP+TLYEGG+F A + FP +YP SPPT RF +KMWHPN+Y +G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++WR+ K +  K+ +  +RK +
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQV 169          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.213e-38
Identity = 74/149 (49.66%), Postives = 97/149 (65.10%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            +L +N  DG +AG  +E + F W   I GP  T +EGG + A + FP +YP+ PPT++F  + +HPNVY DG VCISILH PGDDPN YE ++ERW+PV +VE            PNDES ANIDA K WRE ++E+ + V R  RK+L
Sbjct:   16 ELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKTL 164          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.481e-38
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 515
            L K+   G  AG   E+N+F W   I GPPDT Y  G FNA + FP +YP+SPP + FT  + HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +VE            PN ES ANIDA   WR+ + EF+++V   + KSL
Sbjct:   16 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.303e-36
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 515
            L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP  RF +KMWHPN+Y  G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++W+E K +  ++ +  +RK +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIRKQV 169          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UB2G2_BOVIN7.391e-4353.38Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UB2G2_PONAB9.653e-4353.38Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE9.653e-4353.38Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN9.653e-4353.38Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2R2_RABIT1.442e-3849.67Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE1.442e-3849.67Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN1.442e-3849.67Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC7_SCHPO3.213e-3849.66Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC7_YEAST5.481e-3851.35Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2R1_MOUSE2.303e-3647.02Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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