FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.303e-36
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 515
            L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP  RF +KMWHPN+Y  G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++W+E K +  ++ +  +RK +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIRKQV 169          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.001e-31
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 527
            L +NP + F    V+E+N+ EW V + GPPDTLYEGG F A + FP  YP +PP + FTS+MWHPN+YPDG++CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:   13 LIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 527
            L +NP + F    V+E+++ EW V + GPPDTLYEGG F A + FP  YP +PP + FTS+MWHPN+YPDGK+CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V R V+KSL+  S
Sbjct:   13 LIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKSLDECS 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.308e-31
Identity = 68/158 (43.04%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 527
            +L +NP + F    V+E+N+ EW V + GP DT YEGG F A +TFP NYP  PP + FTS+MWHPN+YPDG++CISILH    +  G       W+P   +E            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:   12 NLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.913e-31
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 527
            L +NP + F    V+E+N+ EW V + GP DTLYEGG F A + FP NYP  PP + FTS+MWHPN+Y DG+VCISILH    +  G       W+PV  ++            PN +SPAN+DAAK +R     E  + +  +V R V+KSL+  S
Sbjct:   13 LTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKSLDECS 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.221e-30
Identity = 67/158 (42.41%), Postives = 90/158 (56.96%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 527
            +L  NP + F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FTS+MWHPN+Y DGK+CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:   12 NLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29
Identity = 63/146 (43.15%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   78 KNPVDGFSAGLVDESNVFEWSVSI-IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            K  +  F   L D+SN+F W++ + +   D++Y GGFF A M FP+++P SPP  RFT  ++HPNVY DG++CISILH  G DP   E   E W+PV TVE            PN  SPAN+DAA ++R+  +++K++V   V +S
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERS 167          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UB2R1_HUMAN2.303e-3647.02Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFB71.001e-3142.68Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA1.308e-3143.31Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK51.308e-3143.04Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP42.913e-3143.95Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM23.221e-3042.41Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST1.598e-2943.15Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBE2B_RAT2.920e-2338.78Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.920e-2338.78Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.920e-2338.78Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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