FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.920e-23
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+  W+  I GP  T +E G F   + F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E+N+  W+  I GP  T +E G F   + F + YP  PPTVRF SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   ++N+  W+  I GP DT +E G F   + F + YP  PPTVRF SK++HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E + E++K+V  CV +S
Sbjct:   16 LQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQ-------------NRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L K+P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PP VRF S+M+HPN+Y DG +C+ IL               +W+P++ V             PN +SPAN +AA+ + E K E+ +KV   V +S
Sbjct:   16 LQKDPPVGIS-GAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.893e-22
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  102 AGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            +G  +  N+  W+  I GPP+T +E G F   +TF D YP  PPTVRF SKM+HPN+Y +G++C+ IL               RW+P + V             PN  SPAN+DAA+ ++E   E++++V + V  S
Sbjct:   25 SGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQ-------------NRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.472e-22
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   96 FSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISIL-HPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 524
            +  G ++  +   W +      D+LY G    A+M FP +YP+ PPT++F SKM+HPN+Y DGK+CISIL      D + +    ++WTPV  +             PN  SPAN+DA+  +R+  +E+ K+V R  R+  E L
Sbjct:   55 YPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.228e-22
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PPTVRF S+M+HPN+Y DG +C+ IL               +W+P++ V             PN  SPAN +AA+ + E K E+ +KV   V +S
Sbjct:   16 LQQDPPAGIS-GAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.192e-22
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  123 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 518
            NV  W+  IIGP DT YE G F  ++ F + YP  PP V+F S+M+HPNVY +G++C+ IL               RWTP + V             PN  SPAN++AA  +++ K ++ K+V   V KS E
Sbjct:   32 NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UBE2B_HUMAN2.920e-2338.78Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.920e-2338.78Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2A_MOUSE1.449e-2238.78Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.449e-2238.78Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME1.893e-2237.41Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC3_ARATH1.893e-2236.05Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_CRYNE1.893e-2237.23Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
Y1A1_ENCCU2.472e-2236.11Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC2_WHEAT3.228e-2236.05Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_YEAST7.192e-2238.64Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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