FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.662e-21
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   81 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 518
            +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + E+ K+V   V KS E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSWE 150          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.662e-21
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L ++P  G S G   E N+  W   I GP +T +E G F   + F + YP  PPTV+F SKM+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E + E++K+V + V +S
Sbjct:   16 LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.088e-21
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            L  +P  G S G     N+  W+  I GP DT +E G F  ++TF ++YP  PPTV+F SKM+HPNVY +G++C+ IL               RW+P + V             PN  SPAN +AA  +RE   E+ ++V   V  S
Sbjct:   16 LSTDPPGGIS-GAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEAS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.088e-21
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   81 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 518
            +P  G SA  + + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F S+M+HPNVY +G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + E+ K+V   V +S E
Sbjct:   19 DPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQ-------------NRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   81 NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 518
            +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP+V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  S AN++A+  +++ + E+ K+V   V KS E
Sbjct:   19 DPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQ-------------NRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSWE 150          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.356e-20
Identity = 51/131 (38.93%), Postives = 69/131 (52.67%), Query Frame = 3
Query:   93 GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            G SA    +SN+  W+ +I GP DT YEG  F   M+FP NYP SPPT+ FTS MWHPNV   G +C+ IL              ++W+ V+ V+            PN+ SP N  AA+ W +   E+K+
Sbjct:   47 GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.022e-20
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   78 KNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            ++P  G SA  + + NV +W+  IIGP DT +E G F  +++F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++AA  +++ +  + K+V   V  S
Sbjct:   18 QDPPSGVSASPLPD-NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQ-------------NRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 49/145 (33.79%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   78 KNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            ++P  G SA  V + NV  W+  IIGP +T +E G F  ++ F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + +++K+V   V  S
Sbjct:   18 QDPPQGVSASPVAD-NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQ-------------NRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEAS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  123 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            NV  W+  IIGP DT +E G F  I+ F + YP  PP+V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++AA  +++ + ++ K+V   V  S
Sbjct:   32 NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQ-------------NRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENS 148          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.154e-20
Identity = 51/143 (35.66%), Postives = 70/143 (48.95%), Query Frame = 3
Query:   72 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRC 500
            L  +  +  SA  VD++++  W   I GP DT Y G  F   + FP NYP  PP ++F S MWHPNV   G +C+ IL              E+W+ V+ VE            PN+ SP N  AA+ W    +E++KKV  C
Sbjct:   20 LLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDIL-------------KEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLAC 149          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UBC2_ASPFU4.662e-2136.99Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC1_CAEEL4.662e-2136.73Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_USTMA6.088e-2136.73Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_TRIHA6.088e-2135.62Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NEUCR1.356e-2036.30Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC11_SCHPO1.356e-2038.93Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC2_CANAL3.022e-2034.48Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_YARLI3.946e-2033.79Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_DEBHA5.154e-2036.15Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC11_YEAST5.154e-2035.66Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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