FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 3
Query:  123 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 512
            ++  W V I G P T +EGG +   M FP+ YP  PP  RFT  ++HPNVYP G VC+SIL+             E W P  T++            PN  SPA  +A   +++ K E++K+V    R++
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 155          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT+K++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT+K++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT+K++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSR 497
            +L   P  G SA   D  N+F W  +I G  DT+YE   F   + FP +YP  PPTV+F ++ +HPNV  +G +C+ IL              ++W+PV+ V             PN+ESP N  AA  W   +DE+KK + +
Sbjct:   17 NLMMGPSPGISA-FPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDIL-------------KDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW-SNQDEYKKVLDK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  ++++ +      RK
Sbjct:   12 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 3
Query:  114 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            D  N+F+W  ++ GP DT+YE   +   + FP +YP  PP V+FT+  WHPNV   G +C+ IL              E WT  + V             PN+ SP N  AA  W   + E+KK
Sbjct:   55 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKK 164          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V E ++F W  +I+GP D+ Y+GG F   + FP  YP  PP V FT++++HPNV  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +      +K
Sbjct:   12 DLAQDPPAQCSAGPVGE-DMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILR-------------SQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 44/147 (29.93%), Postives = 73/147 (49.66%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V E ++F W  +I+GP D+ Y+GG F   + FP  YP  PP V FT++++HPNV  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +      +K
Sbjct:   12 DLAQDPPAQCSAGPVGE-DMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILR-------------SQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 43/147 (29.25%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL ++P    SAG V E ++F W  +I+GP D+ Y GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL              ++W+P  T+             PN + P   + A  ++  + +++       RK
Sbjct:   12 DLGRDPPSSCSAGPVGE-DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRK 144          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UBC9_SCHPO4.824e-1835.38SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UB2D1_MOUSE1.075e-1730.61Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.075e-1730.61Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.075e-1730.61Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBE2C_DICDI1.833e-1734.97Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBCD1_DROME1.552e-1629.25Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2C_SPISO2.647e-1634.68Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
U2D2B_RAT2.647e-1629.93Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.647e-1629.93Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC1_MAGGR4.515e-1629.25Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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