FC872622

Overview
NameFC872622
Unique NameFC872622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL K+P    SAG V E ++F W  +I+GP D+ Y GG F   + FP +YP  PP V F +K++HPN+  +G +C+ IL              E+W+P  T+             PN + P   + A  ++  K++++       +K
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            DL K+P    SAG V E ++F W  +I+GPP++ Y GG F   + FP +YP  PP V F +K++HPN+  +G +C+ IL              E+W+P  T+             PN + P   + A  ++  + +++       +K
Sbjct:   12 DLQKDPPSNCSAGPVAE-DMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQK 144          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 42/147 (28.57%), Postives = 68/147 (46.26%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 509
            D+ ++P    SAG V E ++F W  +I+GP D+ Y GG F   + F  +YP  PP V F +K++HPN+   G +C+ IL              E+W+P  T              PN   P   + A  ++  K +++    +  +K
Sbjct:   12 DMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDIL-------------KEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQK 145          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 41/139 (29.50%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   69 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKK 485
            DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT++++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of FC872622 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 3
Query:  123 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSKMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSR 497
            N+F W  +I G  DT++EGG +   M F D++P +PP  +F   ++HPNVYP G VC+S+L    D           W P  +++            PN E PA  +A + + + + E++K+V +
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-----------WKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150          
The following BLAST results are available for this feature:
BLAST of FC872622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
UBC9_ARATH5.897e-1630.61SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH5.897e-1629.93Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC12_ARATH7.702e-1628.57Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2D3_RAT7.702e-1629.50Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB7.702e-1629.50Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE7.702e-1629.50Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA7.702e-1629.50Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN7.702e-1629.50Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG7.702e-1629.50Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC9_CAEEL1.006e-1532.00SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872622 ID=FC872622; Name=FC872622; organism=Citrus clementina; type=EST; length=761bp
GGGGTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTC
CTTCAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTC
TGCTGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTA
TTGGACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATG
ACTTTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATC
AAAGATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAA
TTCTTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAA
CGGTGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTC
AATGCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGA
AAGAATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGT
GTTAGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCA
ATGCATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGAT
TGGTGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTT
TTTTTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCT
TTTTGCAATTCTTAAAACTTGTGCTAGTTTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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