FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.245e-50 Identity = 99/256 (38.67%), Postives = 157/256 (61.33%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+GYN+NV W G GD +YL + +++P +F PD++++SAGFD Sbjct: 714 IWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFD 964
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49 Identity = 104/257 (40.47%), Postives = 160/257 (62.26%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE S+ AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA L + L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G+N+N+ + G GDA+YLA + +++P +F PD++++S+GFD Sbjct: 685 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFD 934
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49 Identity = 98/255 (38.43%), Postives = 156/255 (61.18%), Query Frame = 2 Query: 5 WNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 W++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+GYN+NV W G GD +YL + +++P +F PD++++SAGFD Sbjct: 715 WSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKVDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFD 964
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 6.133e-49 Identity = 106/256 (41.41%), Postives = 154/256 (60.16%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + + VH+E+H L + ++ D R + S L ++I+ SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE AMGFC +N+VA+ A +L R +L I+KILIVD DVHHGN TQ+ F+ DP +L+ S+HR++ G F+P + G +G G G GYNIN+ W G GD +YL + I+ P K+F PD++++SAGFD Sbjct: 664 IWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGS--GAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFD 914
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 6.133e-49 Identity = 104/256 (40.62%), Postives = 151/256 (58.98%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C L ++A + L SVH+E HV L + ++A L ++I+ SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L + +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P + G +G G G G+N+NV W G GD +YLA + +++P ++F PD++++SAGFD Sbjct: 551 IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKA---SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFD 801
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48 Identity = 103/233 (44.21%), Postives = 136/233 (58.37%), Query Frame = 2 Query: 14 LQAAGI-PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 L AG+ P RC+ +N++E + L VHT HV+ + S + + + Y NE S+ AA LAAG ++A + G + + FA+VRPPGHHA AMGFCL+NN AVAA G K+LIVDWDVHHGN TQ++F ++ VL+ S+HRHE G FYP G +G G GY +NVPW G GD DY+ + H++LP F PD +IISAGFD Sbjct: 185 LATAGVFPGRCLPINAREITKQELQMVHTSEHVDAVDTTSQLLY-------SYFTSDTYANEYSARAARLAAGLCTDLATDIFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALV----AQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGIFYPGT--GAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFD 404
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48 Identity = 104/256 (40.62%), Postives = 152/256 (59.38%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR---------------DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C L ++A + L SVH+E HV L +S + D+ + + ++I+ SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P + G +G G G G+N+NV W G GD +YLA + +++P ++F PD++++SAGFD Sbjct: 538 IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKA---SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFD 788
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48 Identity = 102/257 (39.69%), Postives = 157/257 (61.09%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE SS AA LA G VIE+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA L + L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G G G+G+N+N+ + G GD +YL + +++P +F PD++++S+GFD Sbjct: 681 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGS--GAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFD 930
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48 Identity = 102/249 (40.96%), Postives = 149/249 (59.84%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW+KL G +C + +K+A + L VH++ + + + + D+ + L + Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++A+GFC +NNVAV A L + P + KI I+DWDVHHGN TQ F DP VL+ S+HRH+ G F+P G T IG+G G G+++N+P+ G DA+YLA W ++ P F PD I++SAGFD Sbjct: 513 IWSKLTEEGHVAKCERITAKKASLEQLQMVHSQTYTTFFAVSPTACLKIDANALPLKRFLQLPCGGIGIDSDTYFNDASTQIAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYP-VQCAKIAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPGT--GSVTEIGKGAGKGFSVNIPFSGGVMKDAEYLAAWRTVVEPVLASFCPDFILVSAGFD 758
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.511e-47 Identity = 88/234 (37.61%), Postives = 152/234 (64.96%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++L+ G+ +RC+ L+++EA ++ L VH+ +V+L++ + + ++ + ++IY + + A LAAG+ +++ + V G + + A+VRPPGHH + A GFC++NNVA+AA+ + + + G+++IL+VDWDVHHG Q +F DP VL+FS HR+E G F+P + +G G GLG+ +N+PW G+ADY+A + H+LLP +F P+++++SAGFD Sbjct: 36 DRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVRETQVLGKEELQ-ALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAA---HAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFD 265 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |