FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.245e-50
Identity = 99/256 (38.67%), Postives = 157/256 (61.33%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+ A  L   + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P +  G    +G GPG+GYN+NV W  G     GD +YL  +  +++P   +F PD++++SAGFD
Sbjct:  714 IWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFD 964          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.236e-49
Identity = 104/257 (40.47%), Postives = 160/257 (62.26%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  S+ AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VAVAA  L   +  L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P +  G    +G GPG+G+N+N+ +  G     GDA+YLA +  +++P   +F PD++++S+GFD
Sbjct:  685 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFD 934          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 98/255 (38.43%), Postives = 156/255 (61.18%), Query Frame = 2
Query:    5 WNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            W++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+ A  L   + +L + K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P +  G    +G GPG+GYN+NV W  G     GD +YL  +  +++P   +F PD++++SAGFD
Sbjct:  715 WSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKVDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFD 964          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.133e-49
Identity = 106/256 (41.41%), Postives = 154/256 (60.16%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  +  ++A  + +  VH+E+H  L     +  ++ D R        +  S L         ++I+    SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE   AMGFC +N+VA+ A +L   R +L I+KILIVD DVHHGN TQ+ F+ DP +L+ S+HR++ G F+P +  G    +G G G GYNIN+ W  G     GD +YL  +  I+ P  K+F PD++++SAGFD
Sbjct:  664 IWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGS--GAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFD 914          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.133e-49
Identity = 104/256 (40.62%), Postives = 151/256 (58.98%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  L  ++A  + L SVH+E HV L       +      ++A  L                 ++I+    SS AA  AAGSV ++A +VA  EL + FA+VRPPGHHA+   AMGFC +N+VA+A   L  +      +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P +  G    +G G G G+N+NV W  G     GD +YLA +  +++P  ++F PD++++SAGFD
Sbjct:  551 IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKA---SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFD 801          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 103/233 (44.21%), Postives = 136/233 (58.37%), Query Frame = 2
Query:   14 LQAAGI-PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            L  AG+ P RC+ +N++E   + L  VHT  HV+ +   S   +       +   +  Y NE S+ AA LAAG   ++A  +  G + + FA+VRPPGHHA    AMGFCL+NN AVAA          G  K+LIVDWDVHHGN TQ++F ++  VL+ S+HRHE G FYP    G    +G   G GY +NVPW  G  GD DY+  + H++LP    F PD +IISAGFD
Sbjct:  185 LATAGVFPGRCLPINAREITKQELQMVHTSEHVDAVDTTSQLLY-------SYFTSDTYANEYSARAARLAAGLCTDLATDIFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALV----AQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGIFYPGT--GAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFD 404          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48
Identity = 104/256 (40.62%), Postives = 152/256 (59.38%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR---------------DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  L  ++A  + L SVH+E HV L     +S  + D+ +                 +    ++I+    SS AA  AAGSV ++A +VA  EL + FA+VRPPGHHA+   AMGFC +N+VA+A   L         +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P +  G    +G G G G+N+NV W  G     GD +YLA +  +++P  ++F PD++++SAGFD
Sbjct:  538 IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKA---SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFD 788          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48
Identity = 102/257 (39.69%), Postives = 157/257 (61.09%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG---RCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  SS AA LA G VIE+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VA+AA  L   +  L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P +  G    +G G G+G+N+N+ +  G     GD +YL  +  +++P   +F PD++++S+GFD
Sbjct:  681 IWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGS--GAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFD 930          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48
Identity = 102/249 (40.96%), Postives = 149/249 (59.84%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW+KL   G   +C  + +K+A  + L  VH++ +     +   +  + D+    +   L          +  Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++A+GFC +NNVAV A  L  + P +   KI I+DWDVHHGN TQ  F  DP VL+ S+HRH+ G F+P    G  T IG+G G G+++N+P+  G   DA+YLA W  ++ P    F PD I++SAGFD
Sbjct:  513 IWSKLTEEGHVAKCERITAKKASLEQLQMVHSQTYTTFFAVSPTACLKIDANALPLKRFLQLPCGGIGIDSDTYFNDASTQIAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYP-VQCAKIAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPGT--GSVTEIGKGAGKGFSVNIPFSGGVMKDAEYLAAWRTVVEPVLASFCPDFILVSAGFD 758          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.511e-47
Identity = 88/234 (37.61%), Postives = 152/234 (64.96%), Query Frame = 2
Query:    8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++L+  G+ +RC+ L+++EA ++ L  VH+  +V+L++       +  +  ++ + ++IY +  +   A LAAG+ +++ + V  G + +  A+VRPPGHH +   A GFC++NNVA+AA+   + + + G+++IL+VDWDVHHG   Q +F  DP VL+FS HR+E G F+P   +     +G G GLG+ +N+PW     G+ADY+A + H+LLP   +F P+++++SAGFD
Sbjct:   36 DRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVRETQVLGKEELQ-ALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGAVQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAA---HAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFD 265          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC5_HUMAN7.245e-5038.67Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=... [more]
HDAC4_HUMAN1.236e-4940.47Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC5_PONAB4.696e-4938.43Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=... [more]
HDAC9_HUMAN6.133e-4941.41Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=... [more]
HDAC7_HUMAN6.133e-4940.63Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
HDA15_ARATH1.366e-4844.21Histone deacetylase 15 OS=Arabidopsis thaliana GN=... [more]
HDAC7_MOUSE3.044e-4840.63Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=... [more]
HDAC4_CHICK3.044e-4839.69Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE... [more]
HDA4_CAEBR3.044e-4840.96Histone deacetylase 4 OS=Caenorhabditis briggsae G... [more]
HDA10_HUMAN1.511e-4737.61Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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