FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47 Identity = 87/232 (37.50%), Postives = 148/232 (63.79%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 L+ G+ RC+ L++ EA ++ L VH+ ++ L++ + + ++ + +++Y + + A LAAG+ +++ + V G +++ A+VRPPGHH++ A GFC++NNVA+AA + + + G+ +ILIVDWDVHHG Q +F DP VL+FS HR+E G+F+P + +G+G G G+ +N+PW G+ADYLA + H+LLP +F P+++++SAGFD Sbjct: 38 LRQRGLEERCLCLSACEASEEELGLVHSPEYIALVQKTQTLDKEELH-ALSKQYDAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAK---HAKQKYGLQRILIVDWDVHHGQGIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFD 265
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.414e-45 Identity = 87/232 (37.50%), Postives = 143/232 (61.64%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 L+ G+ RC L+ EA ++ L VH+ ++ L++ + + ++ + +++Y + + A LAAG+ + + + V G +++ A+VRPPGHH++ A GFC++NNVA+AA + + + G+ +ILIVDWDVHHG Q +F DP VL+FS HR+E G F+P + +G G G G+ +N+PW G+ADYLA + H+LLP +F P+++++SAGFD Sbjct: 38 LRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQKTQTLDKEELHT-LSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAAR---HAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFD 265
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.847e-45 Identity = 100/249 (40.16%), Postives = 143/249 (57.43%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 IW+KL G ++C + +K+A + L VH++ + + + + D+ + L + Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++AMGFC +NNVAVA L + P KI I+DWDVHHGN TQ F DP VL+ S+HRH+ G F+P G T +G+ G +NVP+ D +YLA W ++ P F PD II+SAGFD Sbjct: 440 IWSKLIEHGHVQKCEKVTAKKASLEQLQLVHSQTYTTFFAVSPTACLKIDANSLPLKRFLQLPCGGIGVDSDTYFNDASTQTAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKVLQTKYP-AQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGT--GSVTEVGKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFD 685
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 2.042e-44 Identity = 85/239 (35.56%), Postives = 142/239 (59.41%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKE-AKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN--SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 I L+ +G+ +CV N + A ++ + VHT+ + ++ + + + + + NSIYL + + A A G+V++ + + E + +A IVRPPGHHA ++ GFC++NNVAVAA + ++LI+DWDVHHGN TQ++F++D V++ S+HRH+ G FYP + Y+ +GEG G G ++NVP+ + GD +Y + +++P F PD+++ISAGFD Sbjct: 456 ILKTLRESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKA---KRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFD 691 HSP 2 Score: 173.326 bits (438), Expect = 1.120e-42 Identity = 95/228 (41.67%), Postives = 131/228 (57.46%), Query Frame = 2 Query: 29 IPRRCVVL-NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 I +C VL N E D +L H ++ V + S K+ + K +S+++ E S + A V ++ R+ E ++ FA+VRPPGHHA+ GFCL+NNVA AA E G +ILIVD DVHHG+ TQ++F+ D RVL+FS+HRHE G F+P + + IG G GLGYN N+ C D+DYL++ H+LLP F P +IISAGFD Sbjct: 53 ILEKCTVLTNFLEIDDADLEVTHDKSMVKDLME-SEKKTQEDINSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAAE----EAFFSGAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFD 275
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAH_ALCSD (Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3) HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39 Identity = 90/216 (41.67%), Postives = 127/216 (58.80%), Query Frame = 2 Query: 65 AKDKNLLSVHTENHVNLIKNISSKQFDSRR-DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 A D ++L H+ H+ +K +S+ D I + G E A L+AG +E+ RVA GEL++ +A+V PPGHHA + AMGFC++NN +VAA + R LG+ ++ I+DWDVHHGN TQ ++W DP VL S+H+H F P D G+ T G G G GYNINVP G G+A YL D ++L + + P +II+ +GFD Sbjct: 67 ATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITM------MGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGY---ARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPP--DSGYSTERGAGNGHGYNINVPLPPG-SGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFD 268
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34 Identity = 91/240 (37.92%), Postives = 127/240 (52.92%), Query Frame = 2 Query: 8 NKLQAAGI--PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSK----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++L+ GI R V+L +A +++L VHTE +V ++ S K FD+ + G + A LAAG I A+ V E +AFA++RPPGHHA+P GFC NN+A+ +LL + G +I I+DWD HHG+ TQ++F+ D RVLF S H+ YP G+ G G G GY +N+P G GD Y+ V D I+ P +F P I ISAG D Sbjct: 32 DQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTN------------IPVGVFDRALLAAGGAIRAAQAVLNKECENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLKQ----GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQM---PLYPGT--GYPEECGTGKGEGYTVNIPLPPG-TGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQD 249
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29 Identity = 73/212 (34.43%), Postives = 117/212 (55.19%), Query Frame = 2 Query: 80 LLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRH--EFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 LL HT + I+ + R IA+ +++ GS EAA LAAG+ + + + + A+A+VRPPGHH++P +A G+C NN A+A LN +++ ++D DVH+GN T + F+ +VL S+H + +G+ +P G +GE GLGYN+NVP NG GD Y + +++P + FGPD++++ G D Sbjct: 75 LLMFHTSEY---IEKLVEADKSGERCEIAA---GTFMSPGSWEAALLAAGTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSG---SCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWGSSHP--QKGSIDELGEDVGLGYNLNVPLPNG-TGDRGYEYAMNELVVPAVRRFGPDMVVLVVGQD 274
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29 Identity = 73/216 (33.80%), Postives = 119/216 (55.09%), Query Frame = 2 Query: 77 NLLSVHTENHVNLIKNISSK-----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++L VH+ HV ++ + + +D+ Y+ S A L+AG + AE ++++ RPPGHHA D +MGFC++NN+A+A + R LG+++ L++D+DVHHGN T +F++D V++ S+H+ + T +P GF G G G G+N+N+P G G+ +YL + IL + F PD+I +SAGFD Sbjct: 50 DILMVHSSTHVEYLEVFAGRGGGWLDYDT------------YMTPESFSVARLSAGGAMLAAEEALRD--GWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIE---HARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQ-DPRTLFPGT--GFIDETGSGEGEGFNLNIPMPRG-SGNREYLWILGMILPAVLEGFRPDMIFVSAGFD 244
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28 Identity = 77/224 (34.38%), Postives = 120/224 (53.57%), Query Frame = 2 Query: 53 NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSA-----FAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N K A +++ +VH + +V ++ + DS I Y + + + +AAG+ + + + V NS FA++RPPGHHA P MGFC++ NVA+AA + + G+ +I I+D+DVHHGN T F +DP + F S H+ YP G + IG+G G G +N+P G GD V++ I++P + F PDII++SAG+D Sbjct: 113 NFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGS-GPTYATSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAAR---HAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQ---DGSYPGT--GKISDIGKGKGEGTTLNLPLPGG-SGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYD 326
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25 Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 2 Query: 2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE------AMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 I N L++ G +VL ++ +L +H+ ++V I N+S K F+ YL + + +AA L A + + A ++A + + FA+ RPPGHHA + GFC++NN+A AA N + K++I+D+DVHHGN TQ++FW D RV+ H+ YP D IG G IN+P+ DADY+ W+ I+ P F PD +++SAGFD Sbjct: 33 ILNSLKSNGFDD--IVLIEGKSTINEILEIHSRDYVYSIINLS-KSFNYYD-------GDTYLCDRTLDAA-LTAFKLAKEAVKLALKDRDLYFALTRPPGHHAGISGRALGAMSNGFCIFNNIAGAARLAKNY-----MKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQR---GIYPGTGD--ILDIGGEEAKGTKINLPFP-AHSTDADYIFAWNEIVEPILNYFSPDTVLVSAGFD 252 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |