FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 87/232 (37.50%), Postives = 148/232 (63.79%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            L+  G+  RC+ L++ EA ++ L  VH+  ++ L++   +   +     ++ + +++Y +  +   A LAAG+ +++ + V  G +++  A+VRPPGHH++   A GFC++NNVA+AA    + + + G+ +ILIVDWDVHHG   Q +F  DP VL+FS HR+E G+F+P   +     +G+G G G+ +N+PW     G+ADYLA + H+LLP   +F P+++++SAGFD
Sbjct:   38 LRQRGLEERCLCLSACEASEEELGLVHSPEYIALVQKTQTLDKEELH-ALSKQYDAVYFHPDTFHCARLAAGAALQLVDAVLTGAVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAK---HAKQKYGLQRILIVDWDVHHGQGIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFD 265          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA10_RAT (Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.414e-45
Identity = 87/232 (37.50%), Postives = 143/232 (61.64%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            L+  G+  RC  L+  EA ++ L  VH+  ++ L++   +   +     ++ + +++Y +  +   A LAAG+ + + + V  G +++  A+VRPPGHH++   A GFC++NNVA+AA    + + + G+ +ILIVDWDVHHG   Q +F  DP VL+FS HR+E G F+P   +     +G G G G+ +N+PW     G+ADYLA + H+LLP   +F P+++++SAGFD
Sbjct:   38 LRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQKTQTLDKEELHT-LSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTGAVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAAR---HAKQKYGLQRILIVDWDVHHGQGIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFD 265          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.847e-45
Identity = 100/249 (40.16%), Postives = 143/249 (57.43%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            IW+KL   G  ++C  + +K+A  + L  VH++ +     +   +  + D+    +   L          +  Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++AMGFC +NNVAVA   L  + P     KI I+DWDVHHGN TQ  F  DP VL+ S+HRH+ G F+P    G  T +G+    G  +NVP+      D +YLA W  ++ P    F PD II+SAGFD
Sbjct:  440 IWSKLIEHGHVQKCEKVTAKKASLEQLQLVHSQTYTTFFAVSPTACLKIDANSLPLKRFLQLPCGGIGVDSDTYFNDASTQTAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKVLQTKYP-AQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGT--GSVTEVGKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFD 685          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.042e-44
Identity = 85/239 (35.56%), Postives = 142/239 (59.41%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKE-AKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN--SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            I   L+ +G+  +CV  N +  A ++ +  VHT+  +  ++   + + +   +    + NSIYL   + + A  A G+V++  + + E +    +A  IVRPPGHHA   ++ GFC++NNVAVAA +           ++LI+DWDVHHGN TQ++F++D  V++ S+HRH+ G FYP  +   Y+ +GEG G G ++NVP+   + GD +Y   +  +++P    F PD+++ISAGFD
Sbjct:  456 ILKTLRESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKA---KRVLILDWDVHHGNGTQEIFYEDSNVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFD 691          

HSP 2 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 95/228 (41.67%), Postives = 131/228 (57.46%), Query Frame = 2
Query:   29 IPRRCVVL-NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            I  +C VL N  E  D +L   H ++ V  +   S K+     +    K +S+++ E S + A      V ++  R+   E ++ FA+VRPPGHHA+     GFCL+NNVA AA     E    G  +ILIVD DVHHG+ TQ++F+ D RVL+FS+HRHE G F+P   +  +  IG G GLGYN N+      C D+DYL++  H+LLP    F P  +IISAGFD
Sbjct:   53 ILEKCTVLTNFLEIDDADLEVTHDKSMVKDLME-SEKKTQEDINSQCEKYDSVFMTENSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAAE----EAFFSGAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFD 275          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAH_ALCSD (Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain DSM 11172) GN=hdaH PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 90/216 (41.67%), Postives = 127/216 (58.80%), Query Frame = 2
Query:   65 AKDKNLLSVHTENHVNLIKNISSKQFDSRR-DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            A D ++L  H+  H+  +K +S+        D I        +  G  E A L+AG  +E+  RVA GEL++ +A+V PPGHHA  + AMGFC++NN +VAA +    R  LG+ ++ I+DWDVHHGN TQ ++W DP VL  S+H+H    F P  D G+ T  G G G GYNINVP   G  G+A YL   D ++L   + + P +II+ +GFD
Sbjct:   67 ATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITM------MGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGY---ARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPP--DSGYSTERGAGNGHGYNINVPLPPG-SGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFD 268          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y130_ARCFU (Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus GN=AF_0130 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.123e-34
Identity = 91/240 (37.92%), Postives = 127/240 (52.92%), Query Frame = 2
Query:    8 NKLQAAGI--PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSK----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++L+  GI    R V+L   +A  +++L VHTE +V  ++  S K     FD+             +  G  + A LAAG  I  A+ V   E  +AFA++RPPGHHA+P    GFC  NN+A+   +LL +    G  +I I+DWD HHG+ TQ++F+ D RVLF S H+      YP    G+    G G G GY +N+P   G  GD  Y+ V D I+ P   +F P  I ISAG D
Sbjct:   32 DQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGIIDFDTN------------IPVGVFDRALLAAGGAIRAAQAVLNKECENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLKQ----GFERIAILDWDAHHGDGTQEIFYNDDRVLFISTHQM---PLYPGT--GYPEECGTGKGEGYTVNIPLPPG-TGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQD 249          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.855e-29
Identity = 73/212 (34.43%), Postives = 117/212 (55.19%), Query Frame = 2
Query:   80 LLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRH--EFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            LL  HT  +   I+ +        R  IA+     +++ GS EAA LAAG+ +   + + +     A+A+VRPPGHH++P +A G+C  NN A+A    LN       +++ ++D DVH+GN T + F+   +VL  S+H +   +G+ +P    G    +GE  GLGYN+NVP  NG  GD  Y    + +++P  + FGPD++++  G D
Sbjct:   75 LLMFHTSEY---IEKLVEADKSGERCEIAA---GTFMSPGSWEAALLAAGTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSG---SCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWGSSHP--QKGSIDELGEDVGLGYNLNVPLPNG-TGDRGYEYAMNELVVPAVRRFGPDMVVLVVGQD 274          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y1194_METTH (Uncharacterized protein MTH_1194 OS=Methanobacterium thermoautotrophicum GN=MTH_1194 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 73/216 (33.80%), Postives = 119/216 (55.09%), Query Frame = 2
Query:   77 NLLSVHTENHVNLIKNISSK-----QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++L VH+  HV  ++  + +      +D+            Y+   S   A L+AG  +  AE         ++++ RPPGHHA  D +MGFC++NN+A+A     + R  LG+++ L++D+DVHHGN T  +F++D  V++ S+H+ +  T +P    GF    G G G G+N+N+P   G  G+ +YL +   IL    + F PD+I +SAGFD
Sbjct:   50 DILMVHSSTHVEYLEVFAGRGGGWLDYDT------------YMTPESFSVARLSAGGAMLAAEEALRD--GWSYSLGRPPGHHATYDRSMGFCIFNNIAIAIE---HARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIHQ-DPRTLFPGT--GFIDETGSGEGEGFNLNIPMPRG-SGNREYLWILGMILPAVLEGFRPDMIFVSAGFD 244          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA14_ARATH (Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 77/224 (34.38%), Postives = 120/224 (53.57%), Query Frame = 2
Query:   53 NSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSA-----FAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            N K A  +++ +VH + +V  ++    +  DS    I       Y    + + + +AAG+ + + + V     NS      FA++RPPGHHA P   MGFC++ NVA+AA    + +   G+ +I I+D+DVHHGN T   F +DP + F S H+      YP    G  + IG+G G G  +N+P   G  GD     V++ I++P  + F PDII++SAG+D
Sbjct:  113 NFKTATVEDIANVHDKAYVFGLEKAMDEASDSGLIFIEGS-GPTYATSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAAR---HAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTHQ---DGSYPGT--GKISDIGKGKGEGTTLNLPLPGG-SGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYD 326          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: Y535_METJA (Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii GN=MJ0535 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 81/242 (33.47%), Postives = 124/242 (51.24%), Query Frame = 2
Query:    2 IWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE------AMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            I N L++ G     +VL   ++    +L +H+ ++V  I N+S K F+             YL + + +AA L A  + + A ++A  + +  FA+ RPPGHHA          + GFC++NN+A AA    N      + K++I+D+DVHHGN TQ++FW D RV+    H+      YP   D     IG     G  IN+P+      DADY+  W+ I+ P    F PD +++SAGFD
Sbjct:   33 ILNSLKSNGFDD--IVLIEGKSTINEILEIHSRDYVYSIINLS-KSFNYYD-------GDTYLCDRTLDAA-LTAFKLAKEAVKLALKDRDLYFALTRPPGHHAGISGRALGAMSNGFCIFNNIAGAARLAKNY-----MKKVIIIDFDVHHGNGTQEIFWNDNRVIHIDFHQR---GIYPGTGD--ILDIGGEEAKGTKINLPFP-AHSTDADYIFAWNEIVEPILNYFSPDTVLVSAGFD 252          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDA10_MOUSE7.497e-4737.50Histone deacetylase 10 OS=Mus musculus GN=Hdac10 P... [more]
HDA10_RAT1.414e-4537.50Histone deacetylase 10 OS=Rattus norvegicus GN=Hda... [more]
HDA4_CAEEL1.847e-4540.16Histone deacetylase 4 OS=Caenorhabditis elegans GN... [more]
HDA6_CAEEL2.042e-4435.56Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
HDAH_ALCSD1.159e-3941.67Histone deacetylase-like amidohydrolase OS=Alcalig... [more]
Y130_ARCFU1.123e-3437.92Uncharacterized protein AF_0130 OS=Archaeoglobus f... [more]
HDA8_ARATH1.855e-2934.43Histone deacetylase 8 OS=Arabidopsis thaliana GN=H... [more]
Y1194_METTH5.398e-2933.80Uncharacterized protein MTH_1194 OS=Methanobacteri... [more]
HDA14_ARATH4.569e-2834.38Histone deacetylase 14 OS=Arabidopsis thaliana GN=... [more]
Y535_METJA2.772e-2533.47Uncharacterized protein MJ0535 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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