FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18 Identity = 66/234 (28.21%), Postives = 117/234 (50.00%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A G+ + V+ K A + + + HT++++ + +S + + + + L + EG + A G+ + AE++ G+ + AI P G HHA+ DEA GFC Y N AV L E+ +++L VD D+HHG+ + F +V+ S+H+ G F+P D + IG G G Y++NVP ++G D Y + + +L F P+ +++ G D Sbjct: 37 IEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGK--TRIAINWPGGWHHAKKDEASGFC-YLNDAVLGILKLREK----FDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDIGLGKGRYYSVNVPLQDG-IQDEKYYQICEGVLKEVFTTFNPEAVVLQLGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17 Identity = 60/232 (25.86%), Postives = 115/232 (49.57%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDS-RRDRIASKL-NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ + +K A + + HT+ +++ + ++ + +R+ + + + + +G E ++ G +E A R+ G+ + A V G HHA+ EA GFC N++ + LL P ++L +D DVHHG+ ++ F+ RV+ S H+ +G F+P G IG G G Y +NVP +G DA Y +V++ ++ + + P +++ G D Sbjct: 56 GLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDVA---VNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHP-----RVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHK--YGEFFPGT--GELRDIGVGAGKNYAVNVPLRDG-IDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGD 274
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAXY (Acetoin utilization protein acuC OS=Staphylococcus xylosus GN=acuC PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17 Identity = 61/225 (27.11%), Postives = 116/225 (51.56%), Query Frame = 2 Query: 47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 +++ + A D L +H +++ I++ S + ++++ + + +++ +A + G+ + +A+++ G L + + HH+ P A GFC+YN+VA+ S+L+ + + ++L +D D HHG+ TQ F+ + + L +S+ HE G F +P + G YT G G GY +N+P E D +L V+ + P F PDII+ G D Sbjct: 50 IISPRIATDDELSLIHAYDYIQAIRHASHGILSENEAKKYGLDGE-DTLQFRMMHKHSARIVGGA-LNLADQIMSGTLTNGCHLGGGL-HHSLPGRANGFCIYNDVAITISYLMQKYNQ----RVLCIDTDAHHGDGTQWSFYTNDQALIYSI--HETGKFLFPGS--GHYTERGAEKGFGYTVNIPLE-PYTEDQSFLDVFKQTIEPVVASFKPDIIVSVHGVD 262
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17 Identity = 65/232 (28.02%), Postives = 113/232 (48.71%), Query Frame = 2 Query: 29 IPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 +P+ V+ S + ++ HTE++VN ++ ++ K + D + + N + G + L AG +E A R+ ++N ++ PG HHA+ EA GFC N++ + LL ++L +D D+HHG+ Q+ F RV+ S HR FG ++P + G G GPG + INVP D YL +++ ++ ++F P+ I++ G D Sbjct: 67 MPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNH-KMNDI--VINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYH-----KRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHR--FGQYFPGS--GSIMDKGVGPGKYFAINVPL-MAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSD 285
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17 Identity = 66/224 (29.46%), Postives = 110/224 (49.11%), Query Frame = 2 Query: 47 VLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 V+ K A + + + HT+ ++ + +S + + + + L + EG + A G+ + AE++ EG+ A V PG HHA+ DEA GFC Y N AV L E+ +++L VD D+HHG+ + F +V+ S+H+ G F+P D + IG G G Y+INVP ++G D Y + + +L F P+ +++ G D Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGIYDYAAAVGGATLTAAEQLIEGKTRIA---VNWPGGWHHAKKDEASGFC-YLNDAVLGILKLREK----FDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDIGLGKGRYYSINVPLQDG-IQDDKYYQICEGVLKEVFTTFNPEAVVLQLGAD 215
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA21_DICDI (Type-2 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaD PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17 Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 2 Query: 185 YLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPD------EAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDG 541 ++++ S AA +AG+ + + V +G + SAF RPPGHHA D + GFCL N+V + A + + + ++KI I+D+DVHHGN T+++ D F S+H E G FYP + G Sbjct: 1191 FVSKLSLHAAKRSAGATCQAIDNVMKGNVTSAFVAARPPGHHAGRDGLTSGTSSQGFCLLNHVCIGAKYA---QLKYNLDKIAIIDFDVHHGNGTEEILSNDQGFYFLSIHMFEEG-FYPGSGGG 1311
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15 Identity = 65/235 (27.66%), Postives = 112/235 (47.66%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A + ++ ++ K A + + + HT+ ++ ++ +S + D D I L EG + A G+ I A+ + +G A + G HHA+ DEA GFC Y N AV L + E +IL VD D+HHG+ + F +V+ S+H+ G F+P D + +G G G Y++NVP ++G D Y + + +L + F P +++ G D Sbjct: 45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRKFE----RILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDVGLGKGRYYSVNVPIQDG-IQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD 267
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15 Identity = 57/173 (32.95%), Postives = 88/173 (50.87%), Query Frame = 2 Query: 194 EGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 +G E ++AG I A+ + G N+ AI G HHA+ EA GFC N++A+AA LL ++L +D DVHHG+ ++ F+ RV+ S H+ FG ++P G G G G Y +NVP +G D Y +V+ ++ + F P+ +I+ G D Sbjct: 101 DGLYEFCSISAGGSIGAAQELNSG--NAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYH-----QRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHK--FGEYFPGT--GHIKDTGIGTGKNYAVNVPLRDG-IDDESYESVFKPVISHIMQWFRPEAVILQCGTD 261
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15 Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A + ++ ++ K A + + + HT+ ++ ++ +S + + D I L EG + A G I A+ + +G+ A + G HHA+ DEA GFC Y N AV L + ++IL VD D+HHG+ + F +V+ S+H+ G F+P D + +G G G Y++NVP ++G D Y + + +L + F P +++ G D Sbjct: 45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15 Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A + ++ ++ K A + + + HT+ ++ ++ +S + + D I L EG + A G I A+ + +G+ A + G HHA+ DEA GFC Y N AV L + ++IL VD D+HHG+ + F +V+ S+H+ G F+P D + +G G G Y++NVP ++G D Y + + +L + F P +++ G D Sbjct: 45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |