FC875468

Overview
NameFC875468
Unique NameFC875468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14327 contig Ccv1_Contig14327:257..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 66/234 (28.21%), Postives = 117/234 (50.00%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++A G+ +   V+  K A  + + + HT++++  +  +S +  +   + +   L     + EG  + A    G+ +  AE++  G+  +  AI  P G HHA+ DEA GFC Y N AV     L E+     +++L VD D+HHG+  +  F    +V+  S+H+   G F+P   D   + IG G G  Y++NVP ++G   D  Y  + + +L      F P+ +++  G D
Sbjct:   37 IEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGK--TRIAINWPGGWHHAKKDEASGFC-YLNDAVLGILKLREK----FDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDIGLGKGRYYSVNVPLQDG-IQDEKYYQICEGVLKEVFTTFNPEAVVLQLGAD 259          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 60/232 (25.86%), Postives = 115/232 (49.57%), Query Frame = 2
Query:   26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDS-RRDRIASKL-NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            G+ ++  +  +K A  + +   HT+ +++ +  ++    +  +R+ +   + +   + +G  E   ++ G  +E A R+  G+ + A   V   G  HHA+  EA GFC  N++ +    LL   P     ++L +D DVHHG+  ++ F+   RV+  S H+  +G F+P    G    IG G G  Y +NVP  +G   DA Y +V++ ++    + + P  +++  G D
Sbjct:   56 GLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDVA---VNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHP-----RVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHK--YGEFFPGT--GELRDIGVGAGKNYAVNVPLRDG-IDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGD 274          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_STAXY (Acetoin utilization protein acuC OS=Staphylococcus xylosus GN=acuC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 61/225 (27.11%), Postives = 116/225 (51.56%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            +++ + A D  L  +H  +++  I++ S     + ++++  +  + +++        +A +  G+ + +A+++  G L +   +     HH+ P  A GFC+YN+VA+  S+L+ +  +    ++L +D D HHG+ TQ  F+ + + L +S+  HE G F +P +  G YT  G   G GY +N+P E     D  +L V+   + P    F PDII+   G D
Sbjct:   50 IISPRIATDDELSLIHAYDYIQAIRHASHGILSENEAKKYGLDGE-DTLQFRMMHKHSARIVGGA-LNLADQIMSGTLTNGCHLGGGL-HHSLPGRANGFCIYNDVAITISYLMQKYNQ----RVLCIDTDAHHGDGTQWSFYTNDQALIYSI--HETGKFLFPGS--GHYTERGAEKGFGYTVNIPLE-PYTEDQSFLDVFKQTIEPVVASFKPDIIVSVHGVD 262          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 65/232 (28.02%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   29 IPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            +P+   V+ S +    ++   HTE++VN ++ ++ K   +  D +  + N      +  G  +   L AG  +E A R+   ++N    ++  PG  HHA+  EA GFC  N++ +    LL         ++L +D D+HHG+  Q+ F    RV+  S HR  FG ++P +  G     G GPG  + INVP       D  YL +++ ++    ++F P+ I++  G D
Sbjct:   67 MPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDVLRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNH-KMNDI--VINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYH-----KRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHR--FGQYFPGS--GSIMDKGVGPGKYFAINVPL-MAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSD 285          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_XENLA (Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 66/224 (29.46%), Postives = 110/224 (49.11%), Query Frame = 2
Query:   47 VLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            V+  K A  + + + HT+ ++  +  +S +  +   + +   L     + EG  + A    G+ +  AE++ EG+   A   V  PG  HHA+ DEA GFC Y N AV     L E+     +++L VD D+HHG+  +  F    +V+  S+H+   G F+P   D   + IG G G  Y+INVP ++G   D  Y  + + +L      F P+ +++  G D
Sbjct:    4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGIYDYAAAVGGATLTAAEQLIEGKTRIA---VNWPGGWHHAKKDEASGFC-YLNDAVLGILKLREK----FDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDIGLGKGRYYSINVPLQDG-IQDDKYYQICEGVLKEVFTTFNPEAVVLQLGAD 215          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA21_DICDI (Type-2 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaD PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  185 YLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPD------EAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDG 541
            ++++ S  AA  +AG+  +  + V +G + SAF   RPPGHHA  D       + GFCL N+V + A +    + +  ++KI I+D+DVHHGN T+++   D    F S+H  E G FYP +  G
Sbjct: 1191 FVSKLSLHAAKRSAGATCQAIDNVMKGNVTSAFVAARPPGHHAGRDGLTSGTSSQGFCLLNHVCIGAKYA---QLKYNLDKIAIIDFDVHHGNGTEEILSNDQGFYFLSIHMFEEG-FYPGSGGG 1311          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 65/235 (27.66%), Postives = 112/235 (47.66%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++A  + ++  ++  K A  + + + HT+ ++  ++ +S +  D   D I   L       EG  + A    G+ I  A+ + +G    A   +   G  HHA+ DEA GFC Y N AV     L  + E    +IL VD D+HHG+  +  F    +V+  S+H+   G F+P   D   + +G G G  Y++NVP ++G   D  Y  + + +L    + F P  +++  G D
Sbjct:   45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRKFE----RILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDVGLGKGRYYSVNVPIQDG-IQDEKYYQICESVLKEVYQAFNPKAVVLQLGAD 267          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 57/173 (32.95%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  194 EGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            +G  E   ++AG  I  A+ +  G  N+  AI    G HHA+  EA GFC  N++A+AA  LL         ++L +D DVHHG+  ++ F+   RV+  S H+  FG ++P    G     G G G  Y +NVP  +G   D  Y +V+  ++    + F P+ +I+  G D
Sbjct:  101 DGLYEFCSISAGGSIGAAQELNSG--NAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYH-----QRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHK--FGEYFPGT--GHIKDTGIGTGKNYAVNVPLRDG-IDDESYESVFKPVISHIMQWFRPEAVILQCGTD 261          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++A  + ++  ++  K A  + + + HT+ ++  ++ +S +  +   D I   L       EG  + A    G  I  A+ + +G+   A   +   G  HHA+ DEA GFC Y N AV     L  +     ++IL VD D+HHG+  +  F    +V+  S+H+   G F+P   D   + +G G G  Y++NVP ++G   D  Y  + + +L    + F P  +++  G D
Sbjct:   45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267          
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 2
Query:   14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709
            ++A  + ++  ++  K A  + + + HT+ ++  ++ +S +  +   D I   L       EG  + A    G  I  A+ + +G+   A   +   G  HHA+ DEA GFC Y N AV     L  +     ++IL VD D+HHG+  +  F    +V+  S+H+   G F+P   D   + +G G G  Y++NVP ++G   D  Y  + + +L    + F P  +++  G D
Sbjct:   45 IEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQLGAD 267          
The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
HDAC8_XENTR7.312e-1828.21Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
RPD3_YEAST1.247e-1725.86Histone deacetylase RPD3 OS=Saccharomyces cerevisi... [more]
ACUC_STAXY1.247e-1727.11Acetoin utilization protein acuC OS=Staphylococcus... [more]
HDA2_CAEEL3.629e-1728.02Putative histone deacetylase 2 OS=Caenorhabditis e... [more]
HDAC8_XENLA4.740e-1729.46Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 P... [more]
HDA21_DICDI8.084e-1736.80Type-2 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC8_HUMAN1.525e-1527.66Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
CLR6_SCHPO1.525e-1532.95Histone deacetylase clr6 OS=Schizosaccharomyces po... [more]
HDAC8_RAT3.397e-1526.81Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]
HDAC8_MOUSE3.397e-1526.81Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31404C07EF CTVClemen1 Citrus clementina cDNA clone C31404C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bp
GATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTGTCGTTT
TAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCACACGGAA
AATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGATTCCCG
AAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATGAAGGAT
CATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTCGCCGAG
AGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAGACCTCC
TGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTATACAACA
ATGTGGCTGTTGCTGCAAGTTTCCTATTAAATGAAAGACCAGAACTGGGA
ATCAATAAAATTTTGATTGTTGATTGGGATGTTCACCATGGTAACAGTAC
TCAAAAGATGTTCTGGAAGGATCCCCGTGTCCTATTCTTCTCTGTTCATA
GGCATGAGTTTGGAACTTTTTATCCTGCCAATGATGATGGTTTCTATACT
ATGATTGGTGAAGGACCTGGTTTGGGATACAACATTAATGTCCCTTGGGA
GAATGGGAGGTGCGGTGATGCAGACTATCTGGCAGTTTGGGACCATATTT
TACTTCCTGGTTGCAAGGATTTTGGACCTGACATAATCATAATATCTGCT
GGATTCGATG
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