FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15 Identity = 64/238 (26.89%), Postives = 119/238 (50.00%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGS-------SEAAYLAAGSV---IEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ + VL A+D++L H +++V+ +++I+ ++++D+I +L + E S A GSV +++ + + +N A + HHA+ EA GFC N++ +A LL + ++L VD D+HHG+ ++ F+ RV+ +V H+FG ++P G IG G G Y++NVP ++G D Y ++ I+ + F P +++ G D Sbjct: 54 GLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITP---ETQQDQIR-QLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH-----ERVLYVDIDIHHGDGVEEAFYATDRVM--TVSFHKFGDYFPGT--GHIQDIGYGSGKYYSLNVPLDDG-IDDESYHLLFKPIMGKVMEIFRPGAVVLQCGAD 272
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15 Identity = 59/237 (24.89%), Postives = 111/237 (46.84%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+AG VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVISKVMETFQPSAVVLQCGSD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15 Identity = 60/238 (25.21%), Postives = 115/238 (48.32%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ + ++ A +++L H+E++V+ ++ ++ + + +D + ++ E G + + +G IE A R+ + +N + + HHA DEA GFC N++ +A LL ++L +D DVHHG+ Q+ F+ RV+ S H+ G F+P D IG G Y++NVP +G D +YL ++ ++ + P +I++ G D Sbjct: 50 GLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENINEWKD-----VKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGL-----HHARKDEASGFCYVNDIVLAILELLKFHA-----RVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFG-GDFFPGTGD--IDEIGAKTGKLYSVNVPLADG-IDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGAD 268
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15 Identity = 61/232 (26.29%), Postives = 106/232 (45.69%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ + + ++ A LL H+E++VN + +S + + N + + + L G+ ++ ++ + S AI G HHA+ + GFC N++ ++ LL P +IL +D D+HHG+ Q+ F+ RV S H++ G F+P D T IG G + +NVP E+G D Y+ ++ I+ P F P +I+ G D Sbjct: 63 GLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINNQ--SDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHP-----RILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYN-GEFFPGTGD--LTEIGCDKGKHFALNVPLEDG-IDDDSYINLFKSIVDPLIMTFKPTLIVQQCGAD 283
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14 Identity = 59/231 (25.54%), Postives = 110/231 (47.62%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ R + A +++ H++ ++ +K+ + S ++ K N L +G E L++G + A ++ + +++ A + HHA+ EA GFC N++ + LL ++L VD DVHHG+ ++ F+ RV+ +V H++G F+P D IG G G Y++NVP +G D Y +++ I+ + F P +++ G D Sbjct: 50 GLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQML-KFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGL-HHAKKSEASGFCYTNDIVLGILELLKYH-----KRVLYVDIDVHHGDGVEEAFYTTDRVM--TVSFHKYGDFFPGTGD--LKDIGAGKGKLYSVNVPLRDG-ITDVSYQSIFKPIMTKVMERFDPCAVVLQCGAD 268
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 59/240 (24.58%), Postives = 114/240 (47.50%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNIS-------SKQ---FDSRRDR--IASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 GI ++ + ++A + L + H+++++N +K ++ SKQ F+ R D N ++ G S G ++V + ++ +N A + HHA+ EA GFC N++ ++ LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G Y++N P ++G D Y +++ I+ + P ++I G D Sbjct: 41 GIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGS------IGCAVKVNSKESDVAINWAGGL-----HHAKKSEASGFCYTNDIVLSILELLKHH-----ERVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGDYFPGTGD--VKDIGADKGKYYSLNFPLKDG-IDDESYQSIFRPIIRSVMDFYRPGAVVIQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |