FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 58/237 (24.47%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + A+ G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 60/232 (25.86%), Postives = 109/232 (46.98%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ + V A+++ L H E ++N +++++ + + R+ + N + +G AG+ + A + G AI G HHA+ EA GFC N++ +A LL ++L VD D+HHG+ ++ F+ RV+ +V H+FG ++P D IG G Y++NVP ++G D Y +++ I+ + F P +++ G D Sbjct: 60 GLLNQMQVYRPNPARERELCRFHAEEYINFLRSVTPET-QQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHGH---DIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH-----ERVLYVDIDIHHGDGVEEAFYTTDRVM--TVSFHKFGDYFPGTGD--IRDIGHSKGKYYSLNVPLDDG-IDDESYQSLFKPIMGKVMEVFRPGAVVLQCGAD 277
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14 Identity = 63/238 (26.47%), Postives = 109/238 (45.80%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + H++ +V +++I S ++ + N + +G E L+AG VA V + S I G HHA+ EA GFC N++ + LL ++L +D DVHHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N+P +G DA Y +++ I+ + F P +++ G D Sbjct: 38 NLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNM-SEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGG--SVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYH-----QRVLYIDIDVHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNIPLRDGMDDDA-YESIFVPIISKVMETFQPAAVVLQCGAD 262
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14 Identity = 57/237 (24.05%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H+++++ +++I S++ + + + +G E L+ G VA V + + ++ G HHA+ EA GFC N++ +A LL +++ +D D+HHG+ ++ F+ RV+ SV H++G ++P D IG G G Y +N P +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGG--SVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVVYIDIDIHHGDGVEEAFYTTDRVM--SVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-IDDESYEAIFKPVMTKVMEMFQPSAVVLQCGAD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_BOVIN (Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14 Identity = 64/235 (27.23%), Postives = 109/235 (46.38%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A + ++ ++ K A + + S HT+ ++ ++ +S D D I L EG + A G+ I A+ + +G A + G HHA+ DEA GFC Y N AV L + ++IL VD D+HHG+ + F +V+ S+H+ G F+P D + +G G G Y++NVP ++ D Y + + +L F P +++ G D Sbjct: 45 IEAYALHKQMRIVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGIFDYAAAVGGATITAAQCLIDGMCKVA---INWSGGWHHAKKDEASGFC-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VSDVGLGKGRYYSVNVPIQD-CIQDERYYHICESVLKEVYIAFNPKAVVLQLGAD 267
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 56/237 (23.63%), Postives = 111/237 (46.84%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A +++ H+++++ +++I S++ + + + +G E L+AG VA V + + ++ G HHA+ EA GFC N++ +A LL +++ +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N +G D Y A++ ++ + F P +++ G D Sbjct: 40 NLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGG--SVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVVYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNYALRDG-IDDESYEAIFKPVMSKVMEMFQPSAVVLQCGAD 264
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: ACUC_BACSU (Acetoin utilization protein acuC OS=Bacillus subtilis GN=acuC PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 60/225 (26.67%), Postives = 102/225 (45.33%), Query Frame = 2 Query: 47 VLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDR---IASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++ + A ++ L VHT++++ +K + + + + ++ ++ G EAA L G + A+ V G+ A A + HH A GFC+YN+ AVA ++ + ++L +D D HHG+ Q F+ +P V S+ HE G + +P G G G G GY+ N+P + D +L + F PD+II G D Sbjct: 46 IVTPRLASEEELSLVHTDDYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFA--GMHEAASLLVGGTLTAADWVMSGQALHA-ANLGGGLHHGFRGRASGFCIYNDSAVAIQYIQKKYSA----RVLYIDTDAHHGDGVQFTFYDNPDVCTLSI--HETGRYLFPGT--GQIQEKGSGKGYGYSFNIPLD-AFTEDDSFLEAYRTAASEVAAYFEPDVIISQNGAD 258
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 56/238 (23.53%), Postives = 109/238 (45.80%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H++ ++ +++I S++ + + + +G E L+ G + A ++ + + A V G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y ++ I+ + + P +++ G D Sbjct: 41 NLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMA---VNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNFPMRDG-IDDESYGQIFKPIISKVMEMYQPSAVVLQCGAD 265
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13 Identity = 56/238 (23.53%), Postives = 109/238 (45.80%), Query Frame = 2 Query: 8 NKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFD--SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 N L G+ R+ + +A + + H++ ++ +++I S++ + + + +G E L+ G + A ++ + + A V G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y ++ I+ + + P +++ G D Sbjct: 41 NLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMA---VNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNFPMRDG-IDDESYGQIFKPIISKVMEMYQPSAVVLQCGAD 265
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12 Identity = 55/238 (23.11%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L VD D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGAD 259 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |