FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12 Identity = 56/235 (23.83%), Postives = 104/235 (44.26%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A + N AI G HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLL--NNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRHLFQPVIKQVIDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12 Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYALNVPLRDG-IDDQSYKHLFQPVINQVVDYYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12 Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ R+ + +A + + H++++V ++ I S + + N + +G E L++G VA V + + AI G HHA+ EA GFC N++ +A LL ++L +D D+HHG+ ++ F+ RV+ +V H++G ++P D IG G G Y +N P +G D Y ++ I+ + + P I + G D Sbjct: 45 GLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNM-SEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGG--SVAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDIHHGDGVEEAFYTTDRVM--TVSFHKYGEYFPGTGD--LRDIGAGKGKYYAVNFPLRDG-IDDESYDKIFKPIMCKVMEMYQPSAICLQCGAD 263
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 63/235 (26.81%), Postives = 109/235 (46.38%), Query Frame = 2 Query: 14 LQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIY---LNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 ++A G+ + V+ A + + HT++++ + IS Q D ++ Y + EG + A G+ + A+ + +G+ + A HHA+ DEA G C Y N AV L E+ +++L VD D+HHG+ + F +V+ S+H+ G F+P D T G G G Y +NVP+E+G D Y + ++ F P+ +++ G D Sbjct: 46 IEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKIS--QDGDNDDPQSADFGLGYDCPVVEGIFDYAAAVGGATLTAAQNLLDGKCDVAINWAGG-WHHAKKDEASGSC-YVNDAVLGILKLREK----YDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTGD--VTDTGLGKGRWYAVNVPFEDG-VRDDRYCQTFTSVMQEVKALFNPEAVVMQLGAD 268
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 54/238 (22.69%), Postives = 107/238 (44.96%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ ++ LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQG----FTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVISILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVISQVVDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVISQVVDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVINQVVDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 54/238 (22.69%), Postives = 106/238 (44.54%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + + G E G+ ++ A ++ + +N A + HHA+ EA GFC N++ + LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQG----FTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVIGILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYKHLFQPVINQVVDFYQPTCIVLQCGAD 259
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 52/238 (21.85%), Postives = 104/238 (43.70%), Query Frame = 2 Query: 26 GIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLN----------EGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 G+ ++ +V +A ++ H+E++++ ++ +S LN+ + E S + ++ ++ + +N A + HHA+ EA GFC N++ ++ LL P ++L +D D+HHG+ Q+ F+ RV+ S H++ F+P D + +G G Y +NVP +G D Y ++ ++ + P I++ G D Sbjct: 40 GLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQG----FTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGL-----HHAKKFEASGFCYVNDIVISILELLKYHP-----RVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYG-NYFFPGTGDMY--EVGAESGRYYCLNVPLRDG-IDDQSYRQLFQPVIKQVVDFYQPTCIVLQCGAD 259 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |