FC875468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 62/237 (26.16%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 20 AAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIA--SKLNSIYLNEGSSEAAYLAAGSVIEVAERV----AEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFG-TFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 A G+ + V +A + H+ ++V ++ I+ + + + +A + + E E L AG I+ A R+ + +N A + HHA+ +A GFC N++ + LL P ++L +D DVHHG+ ++ F+ RV+ +V H+FG F+P D IGE G Y INVP ++G D+ + ++ I+ + + P I++ G D Sbjct: 40 AYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNKLCDIAINWAGGL-----HHAKKCDASGFCYINDLVLGILELLKHHP-----RVLYIDIDVHHGDGVEEAFYFTDRVM--TVSFHKFGDKFFPGTGD--VKEIGEREGKFYAINVPLKDG-IDDSSFNRLFRTIISKVVEIYQPGAIVLQCGAD 261
BLAST of FC875468 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11 Identity = 39/135 (28.89%), Postives = 69/135 (51.11%), Query Frame = 2 Query: 305 HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPGCKDFGPDIIIISAGFD 709 HHA+ EA GFC N++ + LL ++L +D DVHHG+ ++ F+ RV+ +V H+FG F+P G +G G Y +NVP +G D + +++ ++ + + P+ +++ G D Sbjct: 152 HHAKKSEASGFCYVNDIVLGILELLKM-----FKRVLYIDIDVHHGDGVEEAFYTTDRVM--TVSFHKFGDFFPGT--GHIRDVGAEKGKYYALNVPLNDG-MDDESFRSLFRPLIQKVMEVYQPEAVVLQCGAD 276 The following BLAST results are available for this feature:
BLAST of FC875468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875468 ID=FC875468; Name=FC875468; organism=Citrus clementina; type=EST; length=710bpback to top |