FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNAANTDKDFAWMQAQAEGF 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            LK+T L++ H   G K++ F GW MP+QY   ++E     R    LFDVSHM  + LKGKD + FL+ L+  DV+ +       +      GG +DD ++ +   +H  LVVNA   DKD A ++A  + F
Sbjct:    4 LKRTPLYEQHRRAGAKLIDFGGWEMPVQYA-GVIEEHKAVRSKAGLFDVSHMGEVELKGKDSLAFLQYLLTNDVSRIQDNQIQYSPMCTSAGGVVDDLLVYRYSREHFLLVVNASNTDKDFAWMQAQAEGF 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            E LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM    + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  +D  +LV+NA  +DKD+  I  H   F  +  DVS
Sbjct:    2 EGLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEAMVTGKDAGKFIQYLMTNDINVLKDNEVLYTFMCNEDGGVIDDLLVYKFAEDEFFLVINASNKDKDVKWIMDHKGDFDVEIADVS 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BORPD (Aminomethyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 593
            +LK+T L D HVA G +MV F GW MP+ Y  S +E     R++  +FDVSHM  + + G D   FL +LV  DVA L  PG    +   N  GG IDD ++     D   +VVNA   DKD+A ++
Sbjct:    4 SLKRTPLADAHVAAGARMVDFGGWDMPLAY-GSQLEEHHAVRRDAGMFDVSHMLNVDVTGPDATAFLRRLVANDVARLTVPGKALYSCMLNPQGGIIDDLIVYFFAADQWRVVVNAATADKDVAWMQ 129          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THET2 (Aminomethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +KKT L++ H+  G +MV FAG+ +P+QY  SI+E  L  R+   +FDVSHM    ++G++ + FL+     D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH++A  K F  +  D S
Sbjct:    1 MKKTPLYEAHLRLGARMVDFAGYLLPLQYT-SIVEEHLAVRRAVGVFDVSHMGEFLVRGEEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEFN (Aminomethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MPI Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D H  +VVN+  RDKDLA I     +F
Sbjct:    4 KTVLFNKHLESKAKMVDFHGWEMPINYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGSDACAFLRKLLANDVAKLTVPGKALYGGMLDENAGIIDDLITYYLTDTHYRVVVNSATRDKDLAWINKQAAAF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PHOLL (Aminomethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D H+A G +MV F GW MP+ Y   + E  +  R +  +FDVSHM  + L G  C  FL  L+  D+A L   G    T   N +GG IDD ++  + +D   LVVN+  R+KDLA I  H+ ++
Sbjct:    3 KQTPLYDQHLACGARMVDFHGWMMPLHYGSQMDEHHI-VRTHAGMFDVSHMTIVDLHGTGCRDFLRYLLANDIAKLTEKGKALYTGMLNASGGVIDDLIVYYLSNDFYRLVVNSATREKDLAWINEHVANY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BDEBA (Aminomethyltransferase OS=Bdellovibrio bacteriovorus GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 55/130 (42.31%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLV-VNAGCRDKDLAHIEAHMK 605
            +KKT L D H   G +MV FAGW MP+QY   + E   N R N  LFDVSHM  + +KG   +  LE L   DV+ L  G    ++  N+ GG +DD ++  +  D  YLV VNA  +DKD A +  H K
Sbjct:    1 MKKTPLADTHEKLGARMVDFAGWYMPVQYI-GLREEHNNVRTNVGLFDVSHMGEVRVKGPKALETLEWLTTNDVSKLNDGEAQYSLLPNDQGGLVDDIIVYCLSKDSDYLVCVNASNKDKDFAWMTKHNK 129          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACWK (Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK V F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTVDFGGWELPVQFS-SIKEEHEAVRTGAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STACT (Aminomethyltransferase OS=Staphylococcus carnosus (strain TM300) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 52/142 (36.62%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LKKT L+D  V +  K+V F GW+MP+Q+  SI E     R+   +FDVSHM  + ++GKD   F++ ++  D   L       T   N+ GG IDD +  K+ +    LVVNA   +KD   I +H ++F  K  +VS
Sbjct:    2 SNDLKKTPLYDRFVESNAKIVEFGGWAMPVQFS-SIKEEHNAVREVMGIFDVSHMGEVLIEGKDASDFIQYILSNDTDQLTDNKAQYTALCNDKGGIIDDLITYKLDNQKYLLVVNAANTEKDYNWINSHSENFDVKVENVS 142          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_DESHY7.584e-1937.40Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD7.584e-1937.40Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_CLOBM7.584e-1938.30Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_BORPD9.905e-1941.73Aminomethyltransferase OS=Bordetella petrii (strai... [more]
GCST_THET21.294e-1836.69Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_SHEFN1.294e-1842.31Aminomethyltransferase OS=Shewanella frigidimarina... [more]
GCST_PHOLL1.294e-1839.69Aminomethyltransferase OS=Photorhabdus luminescens... [more]
GCST_BDEBA1.294e-1842.31Aminomethyltransferase OS=Bdellovibrio bacteriovor... [more]
GCST_BACWK1.294e-1839.06Aminomethyltransferase OS=Bacillus weihenstephanen... [more]
GCST_STACT1.690e-1836.62Aminomethyltransferase OS=Staphylococcus carnosus ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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