FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACHK (Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACCZ (Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACCR (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACCQ (Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC7 (Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC4 (Aminomethyltransferase OS=Bacillus cereus (strain B4264) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC3 (Aminomethyltransferase OS=Bacillus cereus (strain 03BB102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC2 (Aminomethyltransferase OS=Bacillus cereus (strain G9842) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC1 (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACC0 (Aminomethyltransferase OS=Bacillus cereus (strain AH820) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + +KG D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BACHK2.882e-1838.28Aminomethyltransferase OS=Bacillus thuringiensis s... [more]
GCST_BACCZ2.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACCR2.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACCQ2.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC72.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC42.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC32.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC22.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC12.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC02.882e-1838.28Aminomethyltransferase OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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