FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BORA1 (Aminomethyltransferase OS=Bordetella avium (strain 197N) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 53/124 (42.74%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            +LK T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM    + G D   FL  LV  DVA L  PG    +   N  GG IDD +I     D   +VVNAG  +KD+A
Sbjct:    4 SLKHTPLAETHLAAGARMVDFGGWEMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNADITGPDATAFLRYLVANDVARLNTPGKALYSCMLNPQGGVIDDLIIYYFAPDSWRVVVNAGTAEKDMA 126          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNPW (Aminomethyltransferase OS=Synechococcus sp. (strain WH7803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-------IYLVVNAGCRDKDLAHIEAHM 602
            +L +T LHD  V  GG+MVPFAGW MP+Q+   + E T   RQ   LFD+SHM  L ++G +    L+ LV  D+  + PG    +V  NE+GG  DD ++  +   +       + +V+NA C   D A I   +
Sbjct:    2 DLHRTPLHDLCVTTGGRMVPFAGWEMPVQFSGLVAEHTA-VRQRVGLFDISHMGVLRIEGSNPKDALQTLVPTDLHRIGPGQACYSVLLNESGGIRDDLIVYDLGQTNSDQGEASLIVVINAACAAADTAWISEQL 136          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            LK+T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM    +KG D + FL+K++  DV+ L  G    ++   E+GG++DD +I K  D H  LVVNA   +KD   +  H+
Sbjct:    2 LKRTPLFAVYERYGAKTIDFGGWELPVQFS-SIKEEHEAVRTRAGLFDVSHMGEFVVKGDDSLAFLQKMMTNDVSKLTDGRVQYSLMCYEDGGTVDDLLIYKKADGHYLLVVNAANIEKDFEWLHGHL 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLCH (Aminomethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.385e-18
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDER 656
            +KKTAL+  H  +G K++ F G+ MP+QY   I E     R    LFDVSHM    +KG   + FL+ +   D+A +  G     +    +GG +DD +I ++  D  +L+VNA   DKD A ++ H+  F      V+   H ER
Sbjct:    1 MKKTALYPCHEQSGAKIIDFGGYLMPVQYAGIIAEHKA-VRSAAGLFDVSHMGNFFVKGSRALEFLQFVTTNDLAKVVDGQAQYNLMLYPSGGIVDDLIIYRMSADTFFLIVNASNADKDFAWLQQHIDQFEG----VTLEDHTER 141          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLTE (Aminomethyltransferase OS=Chlorobium tepidum GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL  +H A G KM+ F G+ MP+QY   I E     R+   LFDVSHM    ++G   + FL+ +   D+A +  G    T+    +GG +DD +I +V  D  +L+VNA   +KD   + +H+  F
Sbjct:    1 MKKTALSAWHEAAGAKMIDFGGFLMPVQYTGIIAEHKA-VREAAGLFDVSHMGNFYVRGARALEFLQYMTTNDLAKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADTFFLIVNASNCEKDFDWLSSHIGQF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACCN (Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L++T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + + G D + FL+++V  DV+ L  G    T    ENGG++DD +I K  ++   LV+NA   +KD   + +H+
Sbjct:    4 LQRTPLFDVYAKYGGKTIDFGGWELPVQFS-SIKEEHEAVRTAAGLFDVSHMGEVEVTGADSLAFLQRVVTNDVSTLKVGGAQYTAMCYENGGTVDDLLIYKRGEEDYLLVINASNIEKDYEWLASHV 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            L++T LH      GG+MVPFAGW MP+Q+   I E     R+   +FD+SHM  L L+G +    L++LV +D+  + PG    TV  NE+GG  DD ++        +   + LV+NA C + D A I   M+
Sbjct:    3 LQRTPLHQLCQDGGGRMVPFAGWEMPVQFSGLIQEHKA-VREQVGMFDISHMGVLRLEGPNPKDALQQLVPSDLHRIGPGEACYTVLLNESGGIRDDLIVYDCGAVDAERGALVLVINAACAEADTAWIRDQME 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAS1 (Aminomethyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +  LKKT L+   V +G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + +KG D    ++ L+  D   +       T   NE GG IDD +  K++++   LVVNAG  +KD   +    K+F A+  +VS
Sbjct:    2 SNELKKTPLYQTFVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRTEMGLFDVSHMGEIIIKGSDASNLVQYLLSNDTDNVTTHKAQYTALCNEQGGIIDDLITYKLEENVYLLVVNAGNTEKDFEWMYEKAKAFDAEVINVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHELP (Aminomethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+    KMV F GW MP+ Y   I E  +  RQ+  +FDVSHM  + + G +   FL KL+  DVA L  PG        + N G IDD +   + D H  +VVN+  R+KDLA I   +K +
Sbjct:    4 KTVLFNKHLEANAKMVDFHGWDMPLNYGSQIEEHHV-VRQDAGMFDVSHMTVVDVTGAEACDFLRKLLANDVAKLKVPGKALYGGMLDHNAGVIDDLITYYLSDTHYRIVVNSATREKDLAWITEQVKGY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CLOBK (Aminomethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            E+LK T L   +   GGK+V FAG+ +P Q+K  + E     R+   LFDVSHM  + + GKD   F++ L+  D+  L       T   NE+GG IDD ++ K  ++  +LV+NA  +DKD+  I  H   F  +  D S
Sbjct:    2 EDLKVTPLRGVYEEYGGKIVDFAGYELPTQFKGFLHEHH-TVREKAGLFDVSHMGEVMVTGKDAGKFIQYLMTNDINILKDNEVLYTFMCNEDGGVIDDLLVYKFAENEFFLVINASNKDKDVKWIMDHKGDFDVEIVDES 141          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BORA16.420e-1842.74Aminomethyltransferase OS=Bordetella avium (strain... [more]
GCST_SYNPW8.385e-1836.76Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_GEOSW8.385e-1838.28Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_CHLCH8.385e-1834.93Aminomethyltransferase OS=Chlorobium chlorochromat... [more]
GCST_CHLTE1.095e-1736.64Aminomethyltransferase OS=Chlorobium tepidum GN=gc... [more]
GCST_BACCN1.095e-1737.50Aminomethyltransferase OS=Bacillus cereus subsp. c... [more]
GCST_SYNPX1.868e-1737.31Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_STAS11.868e-1737.32Aminomethyltransferase OS=Staphylococcus saprophyt... [more]
GCST_SHELP1.868e-1739.23Aminomethyltransferase OS=Shewanella loihica (stra... [more]
GCST_CLOBK1.868e-1736.88Aminomethyltransferase OS=Clostridium botulinum (s... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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