FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACP2 (Aminomethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            LK+T L   +   G K + F GW +P+Q+  SI E     R    LFDVSHM  + +KG+D +PFL++L+  DV+ L  G    T    E+GG++DD ++ + + +   LV+NA   +KD+  +  H
Sbjct:    2 LKRTPLFHAYETFGAKTIDFGGWELPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEIKGQDALPFLQRLLTNDVSKLTDGKALYTAMCYEDGGTVDDLLVYQKEKNDYLLVINASNIEKDVEWLLQH 127          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEDO (Aminomethyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFT 614
            KT L   H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G+D   FL KL+  DVA L  PG        ++N G IDD +   + D H  +VVN+  R+KDLA I      F+
Sbjct:    4 KTVLFHKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGQDARDFLRKLLANDVAKLTVPGKALYGGMLDDNAGVIDDLITYYLSDTHYRVVVNSATREKDLAWIAKQSAPFS 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_GLOVI (Aminomethyltransferase OS=Gloeobacter violaceus GN=gcvT PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            +LK+T L   H+  G ++VPF GW MP+QY     E     R    LFD+SHM   +L G D +  +++LV +D+A L PG    TV  NE  G IDD +      +H  ++VN    DKD   +  H++
Sbjct:    3 DLKRTPLCAQHLQLGARLVPFGGWEMPLQYSTLTREHRA-VRTAVGLFDISHMGKYTLSGPDVLAQIQRLVPSDLARLQPGQAQYTVLLNEQAGIIDDLIFYCRSPEHWVVIVNGATNDKDRRWLAEHLQ 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLP8 (Aminomethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL  +H   G KM+ F G+ MP+QY   I E     R+   LFDVSHM    ++G+  + FL+ +   D+  +  G    T+    +GG +DD +I +V  D  +L+VNA   +KD A +  H+  F
Sbjct:    1 MKKTALSAWHEGAGAKMIDFGGFLMPVQYSGIIAEHKA-VREAAGLFDVSHMGNFYVRGERALEFLQYVTTNDLGKIVDGQAQYTLMLYPDGGIVDDLIIYRVSADTFFLIVNASNCEKDFAWLSDHVGGF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEB9 (Aminomethyltransferase OS=Shewanella baltica (strain OS195) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEB8 (Aminomethyltransferase OS=Shewanella baltica (strain OS185) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEB5 (Aminomethyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEB2 (Aminomethyltransferase OS=Shewanella baltica (strain OS223) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        +EN G IDD +   + D +  +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNA-VRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RUBXD (Aminomethyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            L++T L++ H A G ++V FAGW MP+QY     E     R    LFDVSHM  ++ +G D    L++L+  DV+ L  G         E+GG++DD VI   + +   +VVNA  R+KDLAH   H
Sbjct:    9 LRRTPLYEEHRALGARLVDFAGWEMPVQYAGIKAEHEA-VRTRAGLFDVSHMGEVAFRGPDAERALQRLLTRDVSRLGEGQAGYAAVCLESGGTVDD-VIAYRRGEGFLVVVNAANREKDLAHFRRH 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LYSSC (Aminomethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            LK+T L + +   G K V F GW +P+Q+  SI +     R    LFDVSHM  + + G D + FL+ L+  DV+ +A G    T    ENGG +DD +  K+ DDH  L VNA   +KD
Sbjct:    5 LKRTPLFEEYAKYGAKTVDFGGWELPVQFS-SIKDEHDAVRNRAGLFDVSHMGEILVTGPDALNFLQNLLSNDVSKIATGQAQYTAMCYENGGVVDDLLTYKLADDHYLLCVNAANIEKD 123          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BACP21.868e-1736.22Aminomethyltransferase OS=Bacillus pumilus (strain... [more]
GCST_SHEDO2.440e-1739.69Aminomethyltransferase OS=Shewanella denitrificans... [more]
GCST_GLOVI2.440e-1736.92Aminomethyltransferase OS=Gloeobacter violaceus GN... [more]
GCST_CHLP82.440e-1735.88Aminomethyltransferase OS=Chlorobaculum parvum (st... [more]
GCST_SHEB93.186e-1740.00Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB83.186e-1740.00Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB53.186e-1740.00Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB23.186e-1740.00Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_RUBXD3.186e-1739.37Aminomethyltransferase OS=Rubrobacter xylanophilus... [more]
GCST_LYSSC3.186e-1740.00Aminomethyltransferase OS=Lysinibacillus sphaericu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
back to top