FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_IDILO (Aminomethyltransferase OS=Idiomarina loihiensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            +T L++ HV  G KMV F GW MP+ Y   I E     R++  +FDVSHM  + ++G     FL  L+  DVA L   G    T   NENGG IDD ++    ++   +VVN+  RD+DLA IE     F     DV+    D+  +L
Sbjct:    4 RTPLYEAHVKAGAKMVDFHGWDMPLNYGSQIEEHHA-VRRDCGVFDVSHMTIVDVEGSQAQAFLRYLLANDVAKLKTEGKAQYTSMLNENGGVIDDLIVYFFSENAYRMVVNSATRDRDLAWIEKVAADF-----DVTTKERDDMGML 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_AERS4 (Aminomethyltransferase OS=Aeromonas salmonicida (strain A449) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 54/132 (40.91%), Postives = 70/132 (53.03%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++ T LH  H+  G KMV F GW MPI Y  S +E     R +  +FDVSHM  + L G+    FL+ L+  DVA L  PG    +   N +GG IDD +   + D    LVVN+  R+KDLA I  H   F
Sbjct:    2 IQTTVLHPKHLEAGAKMVDFHGWEMPINY-GSQLEEHHAVRTDAGMFDVSHMTIVDLTGERVKAFLQHLLANDVAKLTVPGKALYSGMLNPDGGVIDDLITYYLTDTFYRLVVNSATREKDLAWIRHHAIDF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ACIC5 (Aminomethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.186e-17
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            L+KTAL+  H   G KMV F GW MP++Y   I E  +  R    LFDVSHM  + L+G   +  ++ + + D + LA G    +      G  +DD ++ K  D+   +V+NAG R+KD   I +H + F
Sbjct:    9 LRKTALNAVHRRLGAKMVDFGGWDMPVEYSGLIAEH-MAVRTGVGLFDVSHMGDIQLRGPGSLDAVQHICMNDASKLAVGQAHYSAMLYPQGTFVDDVIVHKFSDNDYLIVINAGTREKDYEWIRSHAQPF 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKV-----KDDHIYLVVNAGCRDKDLAHIEAHMK 605
            +T L++     GG+MVPFAGW MP+Q+   I E     R +  +FD+SHM  L L+G +    L++LV +D+  + PG    TV  N+ GG  DD +I  +     K   + LV+NA C D D A I   M+
Sbjct:    3 RTPLYELCRTGGGRMVPFAGWEMPVQFSGLIQEHKA-VRNSVGMFDISHMGVLRLEGANPKDTLQQLVPSDLHRIGPGEACYTVLLNDQGGIRDDLIIYDLGAIDEKRGALVLVINAACADSDTAWIRERME 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEAM (Aminomethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 51/130 (39.23%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L   H+ +  KMV F GW+MP+ Y   I E     R++  +FDVSHM  + ++G D   FL KL+  D+A L  PG        N +GG IDD +   + D    +VVN+  R+KDLA I    K F
Sbjct:    4 KTVLFSKHLESNAKMVDFHGWNMPLNYGSQIEEHHA-VRRDAGMFDVSHMTVVDVEGADARAFLRKLLANDIAKLTVPGKALYGGMLNHDGGVIDDLITYYLSDTQYRVVVNSATREKDLAWIGEQAKGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHESW (Aminomethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG    +   +EN G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGTDACAFLRKLLANDVARLKVPGKALYSGMLDENAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEPC (Aminomethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.435e-17
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG    +   +EN G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGTDACAFLRKLLANDVARLKVPGKALYSGMLDENAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CELJU (Aminomethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.099e-17
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL--APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            KTAL+D H + GGK+V F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   +L+ L+  DVA L    G    +   NE GG IDD ++  +  D   +VVN   R+KDLA +     ++  K
Sbjct:    4 KTALYDIHQSMGGKIVDFGGWDMPLHYGSQIDEHH-KVRQHAGMFDVSHMTVVDVTGSDAKAYLQYLLANDVAKLDNLVGKALYSGMLNEQGGVIDDLIVYNM-GDWYRVVVNCSTREKDLAWMSQVANNYQVK 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  258 GGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            GG+MVPFAGW M +Q+ + +M      RQ   +FD+SHM  L+L G      L+ LV +D+  + PG    TV  NE GG  DD ++    D  + +V+NA C D D A I+  ++
Sbjct:   14 GGRMVPFAGWEMAVQF-EGLMAEHRAVRQRCGVFDISHMGVLTLTGSGVKDKLQGLVPSDLQRIGPGEAQYTVLLNEAGGIRDDLIVYDRSDTEVVVVINAACADSDTAWIKQQLE 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PSEAE (Aminomethyltransferase OS=Pseudomonas aeruginosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIY-LVVNAGCRDKDLAHIEAHMKSF 611
            +T L++ HVA G KMV F GW MP+ Y   + E     R++  +FDVSHM  + + G+    +L+ L+  DVA L   G    +   NE GG +DD ++     +H Y +VVNA  RDKD+A ++A    F
Sbjct:    4 RTPLYELHVALGAKMVDFGGWDMPLHYGSQVEEHH-QVRRDCGVFDVSHMTVVDVAGEQATAYLQHLLANDVARLGETGKALYSAMLNEEGGVVDDLIVYLT--EHGYRVVVNASTRDKDIAWMQAQAAGF 131          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_IDILO3.186e-1737.84Aminomethyltransferase OS=Idiomarina loihiensis GN... [more]
GCST_AERS43.186e-1740.91Aminomethyltransferase OS=Aeromonas salmonicida (s... [more]
GCST_ACIC53.186e-1735.88Aminomethyltransferase OS=Acidobacterium capsulatu... [more]
GCST_SYNS94.162e-1737.88Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SHEAM4.162e-1739.23Aminomethyltransferase OS=Shewanella amazonensis (... [more]
GCST_SHESW5.435e-1740.00Aminomethyltransferase OS=Shewanella sp. (strain W... [more]
GCST_SHEPC5.435e-1740.00Aminomethyltransferase OS=Shewanella putrefaciens ... [more]
GCST_CELJU7.099e-1738.81Aminomethyltransferase OS=Cellvibrio japonicus (st... [more]
GCST_SYNR39.271e-1738.79Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_PSEAE9.271e-1738.17Aminomethyltransferase OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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