FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_EXIS2 (Aminomethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.271e-17
Identity = 48/128 (37.50%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            LK+T L D  +A  GKMV FAG+ MP+ +  SI E     R+   +FDVSHM  L + G D + FL++ +  D++ +A G     V   E+GG++DD ++ ++ +    LVVNA   +KD AH+  ++
Sbjct:    6 LKRTPLFDI-IAPTGKMVDFAGFEMPVLFS-SIKEEHTAVRERVGMFDVSHMGELFVSGSDALAFLQQTLSNDISKIAIGQAQYNVLCQEDGGTVDDLLVYRLDEQDYLLVVNASNIEKDEAHLRQYL 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_TERTT (Aminomethyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            LK+T L D H   GGK+V F GW+MP+ Y   I E     R    +FDVSHM  + ++G     FL  L+  DV  L  PG    T   NE+GG IDD ++  + + +  LVVN   R+KDLA I +  +++
Sbjct:    2 LKQTPLFDLHRDMGGKLVDFGGWNMPVNYGSQIEEHHA-VRNGAGMFDVSHMTVVDIQGTGARDFLRYLLANDVDRLKLPGKALYTGMLNESGGVIDDLIVYLMVNGY-RLVVNCATREKDLAWINSQAEAY 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHESR (Aminomethyltransferase OS=Shewanella sp. (strain MR-7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHESM (Aminomethyltransferase OS=Shewanella sp. (strain MR-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHESA (Aminomethyltransferase OS=Shewanella sp. (strain ANA-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEON (Aminomethyltransferase OS=Shewanella oneidensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L + H+ +  KMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        ++N G IDD +   + D    +VVN+  R+KDLA I    + F
Sbjct:    4 KTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVTGTDACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREKDLAWIAKQSQGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_OCEIH (Aminomethyltransferase OS=Oceanobacillus iheyensis GN=gcvT PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            K+T +   + ++G K + F GW +P+Q+  SI       R    LFDVSHM  +S+KG     FL+ ++  D++ L PG    T+   E+GG++DD ++ K+ D+   LVVNA   +KD
Sbjct:    5 KRTPIFTEYASHGAKTIDFGGWDLPVQFS-SIKHEHEVTRTKAGLFDVSHMGEISVKGPKSESFLQYVLTNDISKLEPGKAQYTIMCYEDGGTVDDLIVYKLDDEDYLLVVNAANTEKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACFR (Aminomethyltransferase OS=Bacteroides fragilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE+GG +DD ++ + + +   LVVNA   +KD
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNGVG-VFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVYQYEPEKYLLVVNASNIEKD 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACFN (Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +K T   + H+A G KM  FAG++MPI+Y   I E    C   G +FDVSHM    +KG   + FL+K+   +VA L PG    T F NE+GG +DD ++ + + +   LVVNA   +KD
Sbjct:    1 MKTTPFTEKHIALGAKMHEFAGYNMPIEYSGIIDEHLTVCNGVG-VFDVSHMGEFWVKGPHALDFLQKVTSNNVAALVPGKIQYTCFPNEDGGIVDDLLVYQYEPEKYLLVVNASNIEKD 119          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PELLD (Aminomethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL+ +H   G +++ F GW MP+QY   I E     R    LFDVSHM    +KG     FL+ +   D++    G     V    NGG +DD +I ++     +++VNAG  +KD   ++ H   +
Sbjct:    1 MKKTALYPWHEKAGARIIDFGGWLMPVQYSGIIAEHRA-VRSAAGLFDVSHMGNFYVKGPRAEEFLQHMTTNDLSRAKNGQAQYNVMLYPNGGIVDDLIIYRIDAQTFFIIVNAGNCEKDYQWLQEHAAEY 130          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_EXIS29.271e-1737.50Aminomethyltransferase OS=Exiguobacterium sibiricu... [more]
GCST_TERTT1.211e-1639.39Aminomethyltransferase OS=Teredinibacter turnerae ... [more]
GCST_SHESR1.211e-1639.23Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHESM1.211e-1639.23Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHESA1.211e-1639.23Aminomethyltransferase OS=Shewanella sp. (strain A... [more]
GCST_SHEON1.211e-1639.23Aminomethyltransferase OS=Shewanella oneidensis GN... [more]
GCST_OCEIH1.211e-1636.13Aminomethyltransferase OS=Oceanobacillus iheyensis... [more]
GCST_BACFR1.211e-1640.83Aminomethyltransferase OS=Bacteroides fragilis GN=... [more]
GCST_BACFN1.211e-1640.83Aminomethyltransferase OS=Bacteroides fragilis (st... [more]
GCST_PELLD2.065e-1633.59Aminomethyltransferase OS=Pelodictyon luteolum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
back to top