FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEEB (Aminomethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  204 SDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            S AE L++T L+  H   G +  PF  W MP+QY  SI++     RQ   +FD+SHM  L L+G+  +  L+ LV  +++ L PG    TV  NE GG +DD VI  + D  +  +VNA    KD A  + ++
Sbjct:    3 SMAEALQRTPLYPLH--QGARFTPFGDWEMPLQYS-SILQEHQAVRQQVGMFDISHMGKLVLRGEGVLGALQTLVPTNLSQLQPGQAKYTVLLNEAGGIVDD-VILYMGDGQVRCIVNAATTAKDWAWFQKYL 131          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROM1 (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHM 602
            L +T L+      GGKMVPFA W MP+ +   I E     R+N  +FD+SHM  + LKGK+    L+ LV +DV  + P     TVF  ENGG  DD +I         ++ + LV+NA  ++ D+  + +++
Sbjct:    3 LLQTPLYQECKELGGKMVPFANWEMPVSFSGLIEEHNA-VRKNVGMFDISHMGVVQLKGKNIKSALQNLVPSDVFRIGPSEACYTVFLKENGGIQDDLIIYDQGVLDTNEESVVLVINAARKESDVEWLSSNL 134          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CHLPD (Aminomethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL+ +H   G +++ F G+ MP+QY   I E     R    LFDVSHM    + G+    FL+ +V  D++ +  G     +    NGG +DD +I ++     +L+VNA   +KD A ++ H+ +F
Sbjct:    1 MKKTALYHWHEQAGARIIDFGGYLMPVQYSGIIAEHRA-VRSAAGLFDVSHMGNFYVTGERSEAFLQYMVTNDLSKVRDGEAQYNLMLYPNGGVVDDLIIYRLDSKTFFLIVNASNTEKDYAWLQQHIGAF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANCP (Aminomethyltransferase OS=Xanthomonas campestris pv. campestris GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 53/134 (39.55%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KT L+D H A G KMV F GW MPI Y   I E     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  ++++   LVVNA  RDKDL  I      F  +
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHYGSQIDEHH-QVRRDAGMFDVSHMTVVDLHGVRVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYFMQEEFFRLVVNAATRDKDLQWIGEQAARFEVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANC8 (Aminomethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 53/134 (39.55%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KT L+D H A G KMV F GW MPI Y   I E     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  ++++   LVVNA  RDKDL  I      F  +
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHYGSQIDEHH-QVRRDAGMFDVSHMTVVDLHGVRVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYFMQEEFFRLVVNAATRDKDLQWIGEQAARFEVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SODGM (Aminomethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H A+G KMV F GW MP+ Y   + E     R++  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +    LVVN+  RDKD+  I  H + +
Sbjct:    3 QQTPLYEEHHASGAKMVDFHGWMMPLHYGSQLDEHH-QVRRDVGMFDVSHMTIVDLAGPRTRDFLRHLLANDVAKLTVPGKALYTGMLNASGGVIDDLIVYFLSEIEFRLVVNSETRDKDVEWITRHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PSEA6 (Aminomethyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 48/130 (36.92%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+ +G KMV F GW MPI Y   I E     R+   +FDVSHM  + + G+    +L  L+  DVA L   G    +   NE GG +DD ++   +  +  LVVN+  R KD+  + A  + F
Sbjct:    4 KTVLHSKHLESGAKMVDFHGWEMPINYGSQIEEHHA-VRRTAGMFDVSHMTIVDVVGEQAQDYLRHLLANDVAKLKERGKALYSGMLNEEGGVVDDLIVYHFETTNYRLVVNSATRQKDMDWLNAQAEGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPBL (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS--WH 641
            +K+T L++ H A G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          NENGG +DD  I K   +   +  NA   +   AH+  ++ +   K  D S  WH
Sbjct:    4 VKRTPLYETHRALGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGEPKIVLDFLELVTCNSVASLSDFQVQYNAILNENGGLVDDVTIYKFSAEKYMICSNASNYETVTAHLLKYLPASGVKVSDQSPNWH 147          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURP8 (Aminomethyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            LK T LH  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G+    F E+ +  +V  L   G    +   N  GG IDD ++    +DH  +VVNAG  +KD+A
Sbjct:    4 LKHTPLHATHRALNARMVDFGGWDMPVNYGSQIEEHRA-VRTDAGMFDVSHMCVVDFTGERVRAFFERALANNVGKLQTAGKALYSCLLNPQGGVIDDLIVYYFGEDHFRVVVNAGTAEKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKG--KDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS--WH 641
            +K+T L++ H A G KM+PF GW MP+QY   I E     R+   LFDVSHM  + + G  K  + FLE +    VA L+          NENGG +DD  I K   +   +  NA   +   AH+  ++ +   K  D S  WH
Sbjct:    4 VKRTPLYETHRALGAKMIPFGGWDMPVQYSGIIAEHNAT-REAAGLFDVSHMGEIFITGEPKIVLDFLELVTCNSVASLSDFQVQYNAILNENGGLVDDVTIYKFSVEKYMICSNASNYETVTAHLLKYLPASGVKVSDQSPNWH 147          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_THEEB6.009e-1637.59Aminomethyltransferase OS=Thermosynechococcus elon... [more]
GCST_PROM16.009e-1636.09Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_CHLPD6.009e-1633.59Aminomethyltransferase OS=Chlorobium phaeobacteroi... [more]
GCST_XANCP7.848e-1639.55Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_XANC87.848e-1639.55Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_SODGM7.848e-1638.17Aminomethyltransferase OS=Sodalis glossinidius (st... [more]
GCST_PSEA67.848e-1636.92Aminomethyltransferase OS=Pseudoalteromonas atlant... [more]
GCST_LEPBL7.848e-1635.86Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_BURP87.848e-1638.21Aminomethyltransferase OS=Burkholderia phymatum (s... [more]
GCST_LEPBJ1.025e-1535.86Aminomethyltransferase OS=Leptospira borgpeterseni... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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