FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_COXBU (Aminomethyltransferase OS=Coxiella burnetii GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 593
            + + L++ H       V FAGW MP+ Y   I E     RQ   +FDVSHM  + L+G++   FL  L+  DVA L+  G    T   N  GG IDD ++ +V      LVVNA  RDKD+A I+
Sbjct:    3 RHSPLYEEHAKAKAHFVDFAGWEMPLHYGSQIEEHH-QVRQRAGIFDVSHMGVIDLEGEEATAFLRYLLANDVAKLSDVGRALYTCMLNPQGGVIDDLIVYRVAPTGYRLVVNAATRDKDIAWIK 126          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANC5 (Aminomethyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 52/134 (38.81%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F  +
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYYMTEDFFRLVVNAATREKDLQWIGEQAARFDVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANAC (Aminomethyltransferase OS=Xanthomonas axonopodis pv. citri GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 52/134 (38.81%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I      F  +
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVREFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYYMTEDFFRLVVNAATREKDLQWIGEQAARFDVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ANASP (Aminomethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-----IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            AE L +T L+   V    ++  F GW MP+Q+     E     R    +FD+SHM   +L+GK+ +  L+ LV +D++ L PG    TV  N  GG IDD ++    +D+      +++VNA    KD A I +H+     +  D+S
Sbjct:    8 AETLARTPLYQLGVELKARLTSFGGWEMPVQFSGITREHEA-VRNAAGMFDISHMGKFTLQGKNLISQLQGLVPSDLSRLQPGQAQYTVLLNPQGGIIDDIIVYYQGEDNTGTQQAFIIVNAATTSKDKAWILSHLDQNQVQFQDIS 153          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANOR (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 51/124 (41.13%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 590
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWI 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANOP (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 51/124 (41.13%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 590
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWI 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XANOM (Aminomethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 51/124 (41.13%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 590
            +KT L+D H A G KMV F GW MPI Y  S ++     R++  +FDVSHM  + L G     FL  L+   V  L   G    T   N  GG IDD ++  + +D   LVVNA  R+KDL  I
Sbjct:    3 QKTILNDTHRALGAKMVDFGGWDMPIHY-GSQLDEHHQVRRDAGMFDVSHMTVVDLHGARVRAFLRDLLANSVDKLKVCGKALYTCMLNPQGGVIDDLIVYYMSEDFFRLVVNAATREKDLQWI 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECOLU (Aminomethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFSEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECO5E (Aminomethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-EVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECO57 (Aminomethyltransferase OS=Escherichia coli O157:H7 GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHH-EVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_COXBU1.025e-1539.20Aminomethyltransferase OS=Coxiella burnetii GN=gcv... [more]
GCST_XANC51.339e-1538.81Aminomethyltransferase OS=Xanthomonas campestris p... [more]
GCST_XANAC1.339e-1538.81Aminomethyltransferase OS=Xanthomonas axonopodis p... [more]
GCST_ANASP1.339e-1532.65Aminomethyltransferase OS=Anabaena sp. (strain PCC... [more]
GCST_XANOR1.748e-1541.13Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANOP1.748e-1541.13Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_XANOM1.748e-1541.13Aminomethyltransferase OS=Xanthomonas oryzae pv. o... [more]
GCST_ECOLU1.748e-1537.40Aminomethyltransferase OS=Escherichia coli O17:K52... [more]
GCST_ECO5E1.748e-1537.40Aminomethyltransferase OS=Escherichia coli O157:H7... [more]
GCST_ECO571.748e-1537.40Aminomethyltransferase OS=Escherichia coli O157:H7... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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