FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHIDS (Aminomethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHIBS (Aminomethyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RALPJ (Aminomethyltransferase OS=Ralstonia pickettii (strain 12J) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 54/140 (38.57%), Postives = 70/140 (50.00%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L+ T L+  H + G +MV F GW MP+ Y   I E     RQ+  +FDVSHMC + L G     FL  L+  +V  L  PG    +   N  GG IDD ++   ++D   LVVNAG    DL  I A      A G DV+
Sbjct:    3 LQHTPLNAIHRSLGARMVDFGGWDMPVNYGSQIEEHHA-VRQDAGVFDVSHMCVVDLTGARVRDFLRGLLANNVDKLQTPGKALYSCMLNPKGGVIDDLIVYFFREDWFRLVVNAGTAPTDLEWIVAQN---AAAGTDVT 138
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PELPB (Aminomethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 3 
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +KKTAL+ +H   G K++ F G+ MP+QY+  I E     R    LFDVSHM    ++G     FL+ +   D+     G     +    +GG +DD +I ++  +  +L+VNA    KD   ++ H+ +F
Sbjct:    1 MKKTALYSWHEEAGAKIIDFGGYLMPVQYRGIIAEHHA-VRSAAGLFDVSHMGNFYVRGARAKEFLQYMTTNDLDNAEDGQAQYNLMLYPHGGIVDDLIIYRIDSETFFLIVNASNAQKDFEWLQQHIAAF 130
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEGPL (Aminomethyltransferase OS=Legionella pneumophila (strain Lens) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+A G KMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL KL+  DV  +   G    +   NE+GG IDD ++ +   D+  +V+N+  R  D+A I A  + F
Sbjct:    4 KTPLHTTHLACGAKMVDFHGWDMPLHYGSQLNEHHA-VRNDAGMFDVSHMTIVDILGAGGRQFLRKLLTNDVDQITHNGKALYSCMCNEHGGIIDDLIVYQRASDNYRVVLNSATRQNDVAWIRAKSEGF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEGPH (Aminomethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvT PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+A G KMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL KL+  DV  +   G    +   NE+GG IDD ++ +   D+  +V+N+  R  D+A I A  + F
Sbjct:    4 KTPLHTTHLACGAKMVDFHGWDMPLHYGSQLNEHHA-VRNDAGMFDVSHMTIVDILGAGGRQFLRKLLTNDVDQITHNGKALYSCMCNEHGGIIDDLIVYQRASDNYRVVLNSATRQNDVAWIRAKSEGF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEGPC (Aminomethyltransferase OS=Legionella pneumophila (strain Corby) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+A G KMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL KL+  DV  +   G    +   NE+GG IDD ++ +   D+  +V+N+  R  D+A I A  + F
Sbjct:    4 KTPLHTTHLACGAKMVDFHGWDMPLHYGSQLNEHHA-VRNDAGMFDVSHMTIVDILGAGGRQFLRKLLTNDVDQITHNGKALYSCMCNEHGGIIDDLIVYQRASDNYRVVLNSATRQNDVAWIRAKSEGF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_LEGPA (Aminomethyltransferase OS=Legionella pneumophila (strain Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+A G KMV F GW MP+ Y   + E     R +  +FDVSHM  + + G     FL KL+  DV  +   G    +   NE+GG IDD ++ +   D+  +V+N+  R  D+A I A  + F
Sbjct:    4 KTPLHTTHLACGAKMVDFHGWDMPLHYGSQLNEHHA-VRNDAGMFDVSHMTIVDILGAGGRQFLRKLLTNDVDQITHNGKALYSCMCNEHGGIIDDLIVYQRASDNYRVVLNSATRQNDVAWIRAKSEGF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ESCF3 (Aminomethyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132
[Close]
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ECOUT (Aminomethyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 3 
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  + L+G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + F
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPF 132
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_SHIDS2.284e-1537.40Aminomethyltransferase OS=Shigella dysenteriae ser... [more]
GCST_SHIBS2.284e-1537.40Aminomethyltransferase OS=Shigella boydii serotype... [more]
GCST_RALPJ2.284e-1538.57Aminomethyltransferase OS=Ralstonia pickettii (str... [more]
GCST_PELPB2.284e-1532.06Aminomethyltransferase OS=Pelodictyon phaeoclathra... [more]
GCST_LEGPL2.284e-1536.92Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_LEGPH2.284e-1536.92Aminomethyltransferase OS=Legionella pneumophila s... [more]
GCST_LEGPC2.284e-1536.92Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_LEGPA2.284e-1536.92Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_ESCF32.284e-1537.40Aminomethyltransferase OS=Escherichia fergusonii (... [more]
GCST_ECOUT2.284e-1537.40Aminomethyltransferase OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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