FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALPA (Aminomethyltransferase OS=Salmonella paratyphi A GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALNS (Aminomethyltransferase OS=Salmonella newport (strain SL254) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALHS (Aminomethyltransferase OS=Salmonella heidelberg (strain SL476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALCH (Aminomethyltransferase OS=Salmonella choleraesuis GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SALA4 (Aminomethyltransferase OS=Salmonella agona (strain SL483) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAP-GTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            ++T L++ H   G +MV F GW MP+ Y   + E     R +  +FDVSHM  + L G     FL  L+  DVA L   G    +   N +GG IDD ++    +D   LVVN+  R+KDL+ I  H + +      +   + D+ SL+
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHA-VRTDAGMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYA-----IDITVRDDLSLI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_HERA2 (Aminomethyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 44/131 (33.59%), Postives = 65/131 (49.62%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +K+T L+  H A G +MV F GW MP+QY   I E     R+   LFD+SHM    + G D   F++ +   D++  A G     +   E+GG +DD     +  D   +V NAG  +KD A +  H   +
Sbjct:    1 MKQTPLNARHRALGARMVEFGGWDMPVQYAGIIAEHKAT-REGAGLFDISHMARFWVTGPDSERFIQLIDTFDISKTAIGQSDYGIMCYEDGGIVDDIFTYHLGPDEWMVVANAGNAEKDWAWLNQHTAGY 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_NITEC (Aminomethyltransferase OS=Nitrosomonas eutropha (strain C91) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 48/122 (39.34%), Postives = 63/122 (51.64%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDL 581
            LK T L+  H     KMV F GW MP+ Y   + E     R++  +FDVSHM  + L G++   FL  LV  ++  L  PG    T   N  GG IDD +I  + +    LVVNAG  DKD+
Sbjct:    2 LKTTPLNAAHRGMHAKMVDFGGWDMPLHYGSQLDEHHA-VRRDAGMFDVSHMLTVDLHGENVRQFLRGLVANNIDKLTVPGKALYTCMLNPAGGIIDDLIIYFLSESWFRLVVNAGTADKDI 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BURCJ (Aminomethyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLA 584
            L  T L+  H A   +MV F GW MP+ Y   I E     R +  +FDVSHMC +   G     F E  +  +V  L  PG    +   N  GG IDD ++    ++   +VVNAG  DKD+A
Sbjct:    4 LNHTPLNAAHRALNARMVDFGGWDMPVNYGSQIEEHAA-VRTDAGMFDVSHMCVVDFTGSRVRAFFEHAIANNVGKLKTPGKALYSCLLNPQGGVIDDLIVYYFTEEFFRVVVNAGTADKDIA 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_RALME (Aminomethyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 50/140 (35.71%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            L+ T L+  H A G +MV F GW MP+ Y   I E     R +  +FDVSHMC + L G     FL  L+  ++  L  PG    +   +E GG IDD ++    +D   LVVNA     D+  I++     TA G  V+
Sbjct:    3 LQATPLNAIHRALGARMVDFGGWDMPVNYGSQIEEHNA-VRADAGMFDVSHMCVVDLSGIHARAFLRGLLANNIDKLQTPGKALYSCMLDEKGGVIDDLIVYFFAEDRFRLVVNASTAVGDIEWIQSRN---TATGSGVT 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_KLEP7 (Aminomethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            ++T L++ H   G +MV F GW MP+ Y   I E     R +  +FDVSHM  +   G     FL  L+  DVA L  PG    T     + G IDD ++  + +D+  LVVN+  R+KDLA I    + +
Sbjct:    3 QQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHA-VRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPY 132          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_SALPA1.480e-1433.56Aminomethyltransferase OS=Salmonella paratyphi A G... [more]
GCST_SALNS1.480e-1433.56Aminomethyltransferase OS=Salmonella newport (stra... [more]
GCST_SALHS1.480e-1433.56Aminomethyltransferase OS=Salmonella heidelberg (s... [more]
GCST_SALCH1.480e-1433.56Aminomethyltransferase OS=Salmonella choleraesuis ... [more]
GCST_SALA41.480e-1433.56Aminomethyltransferase OS=Salmonella agona (strain... [more]
GCST_HERA21.933e-1433.59Aminomethyltransferase OS=Herpetosiphon aurantiacu... [more]
GCST_NITEC2.525e-1439.34Aminomethyltransferase OS=Nitrosomonas eutropha (s... [more]
GCST_BURCJ2.525e-1436.59Aminomethyltransferase OS=Burkholderia cepacia (st... [more]
GCST_RALME3.297e-1435.71Aminomethyltransferase OS=Ralstonia metallidurans ... [more]
GCST_KLEP73.297e-1435.88Aminomethyltransferase OS=Klebsiella pneumoniae su... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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