FC875498

Overview
NameFC875498
Unique NameFC875498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC875498 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:  331 DSWESKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAXQFAKPRSDP 669
            ++W    A Q PEYP+ E L +V+  L+ +PP+VFAG              G+AFLLQGGDCAE+F   +A++IR+  + LLQMG VL +   +PVVKVGR+A Q++KPRS P
Sbjct:   13 NTWRDLPAAQQPEYPDTEALRAVIADLESYPPLVFAGECDQLRARMAAVAKGEAFLLQGGDCAEAFDAVSADHIRNKLKTLLQMGAVLTYAASVPVVKVGRIAGQYSKPRSKP 125
[Close]
BLAST of FC875498 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 55/116 (47.41%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  322 WTVDSWESKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAXQFAKPRSDP 669
            W  DSW SK   Q PEYP+K  LE     L   PPIV                 GKAFLLQGGDCAE F     + I    ++LLQM +VL++G   PVV++GRMA Q+AKPRS P
Sbjct:   12 WAPDSWRSKPIKQCPEYPDKAALEKATNELKTLPPIVLPNEIIRLREHLRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSP 127
The following BLAST results are available for this feature:
BLAST of FC875498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AROF_STRCO9.506e-2547.79Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR1.051e-2347.41Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404F02EF CTVClemen1 Citrus clementina cDNA clone C31404F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875498 ID=FC875498; Name=FC875498; organism=Citrus clementina; type=EST; length=673bp
GAGGTTCCTCTTTCACGATAAAGAGTTAAAGAGCCTCCGTTTATTTGAAA
AAAAAAAGGGAAAAAAGAAATTCGTTTCATTTACATTTCAACAAAAATAA
ATTAGAACATTATGGCTCTCGTTGGCAGTACTTCAATTACTCCCACAAAA
TCATCCTTCGTTCAGCCACAATCTCAGCCGTTCATCACCAAACCCAGATC
AAATATCCATCCCATCTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCAC
CGTCTGCCGTAAAAACCACAACAAAGGCACCCGAGCCAGTCCTCAAGACC
AGCAATGTGGGTCCCCAAAAATGGACGGTTGACAGCTGGGAATCCAAGAA
GGCTTTGCAGCTGCCGGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTGC
TGAAAACGCTCGACGATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAGG
AGCTTGGAGGAGCGGCTAGCTGAAGCCGCCATGGGCAAAGCTTTCTTGCT
TCAAGGCGGTGATTGCGCTGAGAGTTTCAAAGAGTTTAATGCTAATAACA
TTCGTGACACTTTCAGAATCCTTCTCCAGATGGGTGTTGTGCTAATGTTC
GGCGGTCAAATGCCCGTTGTTAAGGTGGGAAGAATGGCANGGCAGTTTGC
GAAGCCGAGATCAGATCCGTTTG
back to top