FC875589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_DROME (Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18 Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 +FF V G+E G S+ N EA E + G+ +GIITPY+ Q L +++ L+S +++ I +VDAFQG+E+D+IIMSCVR++ G+GF+ D RR+NVALTRA+ + ++GN L + W L+ K R ++ Sbjct: 726 MFFLVTQGQEEIAGSGTSFLNRTEA----ANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVE 880
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18 Identity = 54/161 (33.54%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 19 PYIFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV--LNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS-NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 P +F+ + G E SY N EA E + G+ +G+ITPY+ Q + + +N E +++ + +VDAFQG+E+D I++SCVR++ N G+GF++D RR+NVALTRA+ L ++GN L + + W L+ K + C ++ Sbjct: 730 PMMFWSNL-GNEEISASGTSYLNRTEA----ANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCLVE 885
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_TAKRU (Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes GN=rent1 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17 Identity = 60/159 (37.74%), Postives = 90/159 (56.60%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQH--EFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 +FF V G+E SY N EA E + L G +GIITPY+ Q L +F L+++ + + I +VDAFQG+E+D II+SCVRA+ H G+GF+ D RR+NVALTRA+ + ++GN AL++ W L+ + K + ++ Sbjct: 727 MFFYVTQGQEEIASSGTSYLNRTEA----ANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ-VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVE 880
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_SCHPO (Regulator of nonsense transcripts 1 homolog OS=Schizosaccharomyces pombe GN=SPAC16C9.06c PE=2 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17 Identity = 75/229 (32.75%), Postives = 108/229 (47.16%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLY----INTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD--MDSLPKEFSVALAAKAPGYGPLQGKIPHNARGLRSAGQRHRSFDMNMESRSGTPSEDDEKVSRXWN 690 + F G+E S+ N EA C E + T + +GI+TPY Q + +N N KDLY + +VDAFQG+E+D II+SCVR+S H G+GFV D RR+NVALTRA+ + V+GN L + W + K + ++ ++SL K FS+ L P P + K N + RS + + S S P+ WN Sbjct: 674 LMFYANFGQEELSASGTSFLNRTEAS--TC--EKIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQN--NGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQK-FSLTL---TPPQKPQKFKRDLNVQ--RSLSPIQNAGSAMLPSFSNLPNLYSSSYLEEWN 890
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: Y104_METJA (Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus jannaschii GN=MJ0104 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16 Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 40 IHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKA 474 + G E S SY N++EA E + + +K + K+ +ITPY Q++ L+ F E D+ +NTVD FQG+E + I++S VR N G F+ D+RR+NVA+TRA+R L ++GN L Q + +I +K+ Sbjct: 521 VEGIERKDKESPSYYNIEEA-------EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFE-----EHNIDIEVNTVDGFQGRENEAIVISFVRTKNFG--FLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKS 651
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16 Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1 Query: 43 HGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNVLNSEEGKDLYIN----TVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMD 492 +GRE S+ N EA E + L G+ +G+ITPY+ Q + + +N KDLYI +VDAFQG+E+D II+SCVRA+ +GF+ D RR+NV LTRA+ L ++GN +L ++ W L+ + + C ++ Sbjct: 688 YGREEISANGTSFLNRIEAMN----CERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQ--MNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVE 836
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: YD002_HUMAN (Uncharacterized protein FLJ44066 OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16 Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 1 Query: 76 SYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEFRNV-LNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477 S+ NV EA F + L + +L + G+ +G+IT YK Q+ L H V + + K + ++TVDAFQG E+++II+SCVR VGF+ +R+NVALTR +R L ++GN L ++ W +I + R Sbjct: 753 SFHNVAEATFTLKLIQ----SLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ--VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHCEGR 881
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15 Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 28 FFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVTVGIITPYKLQLKCLQHEF--RNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASNH-GVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKAR 477 FF G E S+ N EA E L L G+ +G+IT Y+ Q + + + LNS+ +++ I +VDAFQG+E+D II++CVR+++ G+GF++D RR+NVA+TRA+ L ++GNA L + D W LI K++ Sbjct: 721 FFWHCSGSEELSASGTSFLNRTEA----ANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSK 869
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: MOV10_MOUSE (Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15 Identity = 66/227 (29.07%), Postives = 105/227 (46.26%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----CLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCYMDMDSLPKEFSVALAAKAPGYGPLQG--KIPHNARGLRSAGQRHRSFDMNMESRSGTP 654 I F + G++ G S S+ N +EA + L G +++ VG+I+PY+ Q++ C+ R + ++ KDL + +V+ FQGQER VI++S VR+S + +GF+ + +R NVA+TRA+ L V+GN L DW + K Y P + + G LQG K+ + G R RH++ E G P Sbjct: 777 IIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGC-PFPAKLDL-----QQGQDLLQGLSKLSPSTSGPR----RHQNLPQEREGEGGLP 993
BLAST of FC875589 vs. ExPASy Swiss-Prot
Match: MOV10_BOVIN (Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14 Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1 Query: 25 IFFDVIHGRESHRGGSVSYQNVDEAKFGVCLYEHLQKTLKSMGLGKVT---VGIITPYKLQLK----CLQHEFRNVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRAS--------NHGVGFVADIRRVNVALTRARRALWVMGNAGALTQSDDWAALIADSKARNCY 486 I F + G++ G S S+ N +EA + L G +++ VG+I+PY+ Q++ C+ + + ++ KDL + +V+ FQGQER VI++S VR+S + +GF+ + +R NVA+TRA+ L V+GN L DW + K Y Sbjct: 776 IIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGY 944 The following BLAST results are available for this feature:
BLAST of FC875589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875589 ID=FC875589; Name=FC875589; organism=Citrus clementina; type=EST; length=691bpback to top |