FC875649

Overview
NameFC875649
Unique NameFC875649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   50 TKNIAKRSKKHLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 691
            +K+  K +KK  +  LY+ +     +  SV+  L +++K  K + + EV   +  LR RK Y   L+L E +      + T ++ A  LDLVAKV  +  AE +  D+PE+S+  + Y +LL NC  K  +                  S    N L+ LY+     +KI  ++  M+  +I P   TY+  + +     DI+G E+++E +K +G
Sbjct:  132 SKDGGKPTKKRGQSELYESIV----AYKSVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFP-TSVFACNQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEG 341          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 58/212 (27.36%), Postives = 102/212 (48.11%), Query Frame = 2
Query:   71 SKKHLEEALYDRLFKK--GSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 691
            S+K +E+     LFK    +  +S+   L+++++    + + E+   + +LR R++Y  AL++SE +E  + +  T  D A  LDL  K++G++  E     +P++ K  + Y +LL NC     +                GF    F    M L  K    +KI  ++  M+  +I P   TY + +    A NDISG E+++E MK +G
Sbjct:  121 SRKTVEKK-QSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDL---GFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMKDEG 328          
BLAST of FC875649 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 47/190 (24.74%), Postives = 92/190 (48.42%), Query Frame = 2
Query:  125 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 691
            S +SV   L+++++  K   + E    + +LR R+++  AL+++E + E +       D A  LDL++KV+G    E Y   +PE+ +  L Y +LL  +                       S+   N ++ LY +    +KI  ++  ++  ++ P+  TY + +    + NDI+G E+++E MK +G
Sbjct:  138 SGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEG 326          
The following BLAST results are available for this feature:
BLAST of FC875649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PP234_ARATH4.236e-1328.24Pentatricopeptide repeat-containing protein At3g15... [more]
PP135_ARATH1.609e-1227.36Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH7.988e-1224.74Pentatricopeptide repeat-containing protein At1g15... [more]

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Properties
Property NameValue
Genbank descriptionC31401C08EF CTVClemen1 Citrus clementina cDNA clone C31401C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875649 ID=FC875649; Name=FC875649; organism=Citrus clementina; type=EST; length=723bp
TAGAGAAAGCTAAAGAAGAAAAATGGCGATGCCGCAACGGTTTGGGAGGA
CCAAGAACATAGCAAAGCGGTCGAAGAAGCACTTGGAAGAAGCGCTTTAC
GACAGGCTATTCAAAAAAGGTAGCTCCGACGTTAGCGTTCGACAGCAGCT
GAACCAGTTTCTCAAGAGCAAAAAACGTGTCTTCAAATGGGAAGTCGGCG
ACACTCTCAAGAAGCTTCGCGATCGCAAGCTCTATTACCCTGCCCTCAAG
TTATCAGAAAATATGGAAAAGAGGGGTATGAACAAGACAGTCAGTGATCA
AGCTATTCATCTTGATCTAGTTGCCAAAGTTCAAGGTATTGATGCTGCAG
AAAACTATTTTGTTGATCTTCCTGAAACATCAAAGAACCATCTTACATAT
GGTTCTCTTCTGAATTGCTACTGCAAGGAATTGATGACTGAAAAAGCAGA
AGCTCTCTTGGAAAAGATGAAGGAACTTAACCTTGGGTTTAGCTCCATGC
CTTTTAACAGCCTCATGACCCTTTATGCAAAGACTGGCCACCCAGAAAAA
ATACCAGCCATTATACAAGAAATGAAGGCGTCGAGTATCATGCCAGACTC
GTACACATACAATGTCTGGATGAGGGCTCTGGCTGCTGTCAATGATATTT
CTGGGGCTGAGAGAGTCATTGAAGAGATGAAGAGGGATGGTCGGGTTGCT
GCTGATTGGACACATTCAGTACT
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