FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 115/216 (53.24%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + FG  AR  +++GV+ +A AVK T+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK VA  T+  AGDGTT ATVL QAI+ EG K VAAG N +DL+ GI  A+ A +++L  +++ ++T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ +P  Q   L++P
Sbjct:    3 AKQVLFGDDARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAIVQEGLKYVAAGFNPIDLKRGIDKAVSAAVAELAKQSKPVTTSKEIAQVGSISANSDESIGKIIADAMDKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINNPDKQVAALDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ALCBS (60 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 116/217 (53.46%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK+I F   AR  M +GV+ +A+AVKVT+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL QA + EG KSV AG+N MDL+ GI  A+ AV+ +LK  +      + I QV TISAN ++ +GE++A+AMEKVG+EGVITV +G ++ NEL+ V GM+  RGY+SPYF+ + +  + ELE+P
Sbjct:    1 MAKEILFRDEARQRMAKGVNILADAVKVTLGPKGRNVVLEKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAFVNEGLKSVTAGMNPMDLKRGIDQAVAAVVEELKKLSTPCDNTKSIEQVGTISANADKSVGEIIAQAMEKVGQEGVITVEEGQSLQNELDVVEGMQFDRGYLSPYFINNQEKMQVELEDP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RICFE (60 kDa chaperonin OS=Rickettsia felis GN=groL PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.564e-60
Identity = 118/217 (54.38%), Postives = 159/217 (73.27%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK I  G   R  +L+GV  +A+AVKVT+GPKGRNV+IE+S G+PK+TKDGVTVA SIE +DK ++ GA L+K  A    + AGDGTT ATVL +A+  EG K VAAG N MDL+ G+ +A++AV+ ++K  ++ I++ EEI QV TIS+NG++EIGE +A+AME+VGKEGVITV +      ++E V GM   RGY+SPYFVT+ +    ELENP
Sbjct:    1 MAKLIKHGSEGREQVLKGVDILADAVKVTLGPKGRNVLIEQSFGSPKITKDGVTVAKSIELKDKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALAREGNKLVAAGYNPMDLKRGMDLAVNAVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RICTY (60 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 118/215 (54.88%), Postives = 157/215 (73.02%), Query Frame = 3
Query:   78 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            K I  G  AR  ML+G+  +A+AVKVT+GPKGRNV+IE+S G PK+TKDGVTVA SIE +DK ++ GA L+K  A    + AGDGTT ATVL +A+  EG K VAAG N MDL+ G+ +A++AV+ ++K  ++ I++ EEI QV TIS+NG++EIGE +A+AME+VGKEGVITV +      ++E V GM   RGY+SPYFVT+ +    ELENP
Sbjct:    4 KLIKHGSKAREQMLEGIDILADAVKVTLGPKGRNVLIEQSFGAPKITKDGVTVAKSIELKDKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALAREGNKLVAAGYNPMDLKRGMDLAVNAVVEEIKRSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEA6 (60 kDa chaperonin OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ F   AR  ML GV+ +A AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL Q+I+TEG K+VAAG+N MDL+ GI  A+ A +  LK+ +   +  + I QV TISAN + E+G+L+A AM+KVGKEGVITV +G ++ NELE V GM+  RGY+SPYF+ + +    EL++P
Sbjct:    3 AKEVRFSDDARVKMLAGVNILANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGIDKAVIAAVEQLKTLSVPCADSKAIAQVGTISANSDTEVGDLIAEAMDKVGKEGVITVEEGQSLQNELEVVEGMQFDRGYLSPYFMNNQENGTVELDSP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_POLSQ (60 kDa chaperonin OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 117/216 (54.17%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  M++GV+ +A AVK T+GPKGRNV+IE+S G P +TKDGV+VA  IE +DK +++GA +VK+VA  T   AGDGTT ATVL Q+I+ EG K V +G N MDL+ GI  A+ A I++L   ++  +T +EI QV +ISAN +  IG+ +A AMEKVGKEGVITV DG ++ +ELE V GM+  RGY+SPYF+  P+ Q   LE+P
Sbjct:    3 AKDVVFGDSARTKMVEGVNILANAVKTTLGPKGRNVVIERSFGGPTITKDGVSVAKEIELKDKLQNMGAQMVKEVASKTADIAGDGTTTATVLAQSIVREGMKYVVSGHNPMDLKRGIDKAVTAAIAELAKISKPCTTTKEIAQVGSISANSDHSIGQRIAEAMEKVGKEGVITVEDGKSLEDELEVVEGMQFDRGYLSPYFINQPEKQVAVLESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PELUB (60 kDa chaperonin OS=Pelagibacter ubique GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 115/217 (53.00%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK + F   ARAAM++GV  +A  VKVT+GPKGRNV+I+KS G P++TKDGV+VA  I+  DK +++GA +VK+VA  TN+ AGDGTT AT+L QAI+ EG K V AG+N MD++ GI  A++ V + L + A+ +   +EI QV TISANG++EIG ++A+AM+KVG EGVITV +   +  EL+ V GM+  RGY+SPYF+T+      ELENP
Sbjct:    1 MAKVVKFDSEARAAMIRGVDILANTVKVTLGPKGRNVVIDKSYGAPRITKDGVSVAKEIDLEDKFENMGAQMVKEVASKTNEEAGDGTTTATILAQAIVKEGVKYVTAGMNPMDVKRGIDAAVEHVKASLIASAKKVKDTDEIAQVGTISANGDKEIGNMIAKAMQKVGNEGVITVEEAKGVETELDVVEGMQFDRGYLSPYFITNADKMTTELENP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_FRATT (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis GN=groL PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 118/216 (54.63%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   ARA ML GV+ +A AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA  T   AGDGTT ATVL QA+LTEG K+VAAG+N MDL+ GI  A   ++ +LK+ ++  S P+ I QV TISAN +  +G+L+A AM KVGKEGVITV +G    +EL+ V GM+  RGY+SPYF T+ +    +LENP
Sbjct:    3 AKQVLFSDEARAKMLDGVNTLANAVKVTLGPKGRNVVLDKSFGTPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQFDRGYLSPYFATNQENMTTDLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_FRAT1 (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 118/216 (54.63%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   ARA ML GV+ +A AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA  T   AGDGTT ATVL QA+LTEG K+VAAG+N MDL+ GI  A   ++ +LK+ ++  S P+ I QV TISAN +  +G+L+A AM KVGKEGVITV +G    +EL+ V GM+  RGY+SPYF T+ +    +LENP
Sbjct:    3 AKQVLFSDEARAKMLDGVNTLANAVKVTLGPKGRNVVLDKSFGTPTITKDGVSVAKEIELEDKFENMGAQIVKEVASKTADVAGDGTTTATVLAQALLTEGLKAVAAGMNPMDLKRGIDKATARLVEELKALSKPCSDPKSIEQVGTISANSDATVGKLIADAMAKVGKEGVITVEEGKGFEDELDVVEGMQFDRGYLSPYFATNQENMTTDLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_AMOPS (60 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 116/217 (53.46%), Postives = 156/217 (71.89%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK++ FG  AR  ML GV+ +A+ VK TMGP GRNV++E+S G P VTKDGV+VA  IEF ++ K++GA +VK+VA  T+  AGDGTT ATVL ++I+ EG K+VAAG+N MDL+ GI  A+ A+  +L+  ++     + I QV TISAN ++ IG ++A AMEKVGKEGVITV DGN + NEL  V GM+  RGYISPYF+ + +    ELE+P
Sbjct:    1 MAKELRFGDDARQQMLAGVNALADRVKATMGPSGRNVVLERSFGAPTVTKDGVSVAKEIEFENRFKNMGAQMVKEVAAKTSDTAGDGTTTATVLARSIVVEGHKAVAAGMNPMDLKRGIDKAVTAITKELQKMSKPCKDGKAIAQVGTISANSDQAIGSIIAEAMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSAELEHP 217          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BORPD2.729e-6053.2460 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]
CH60_ALCBS2.729e-6053.4660 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH60_RICFE3.564e-6054.3860 kDa chaperonin OS=Rickettsia felis GN=groL PE=3... [more]
CH60_RICTY4.655e-6054.8860 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3... [more]
CH60_PSEA64.655e-6053.7060 kDa chaperonin OS=Pseudoalteromonas atlantica (... [more]
CH60_POLSQ4.655e-6054.1760 kDa chaperonin OS=Polynucleobacter sp. (strain ... [more]
CH60_PELUB4.655e-6053.0060 kDa chaperonin OS=Pelagibacter ubique GN=groL P... [more]
CH60_FRATT4.655e-6054.6360 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRAT14.655e-6054.6360 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_AMOPS4.655e-6053.4660 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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