FC876272

Overview
NameFC876272
Unique NameFC876272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10324 contig Ccv1_Contig10324:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP4_RAT (Receptor expression-enhancing protein 4 OS=Rattus norvegicus GN=Reep4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+    E F D   SWFP Y E+K+AF ++L SP T+G   +Y+  + P +S+HE +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFAIFMAAETFTDIFISWFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP4_MOUSE (Receptor expression-enhancing protein 4 OS=Mus musculus GN=Reep4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+    E F D   SWFP Y E K+AF ++L SP T+G   +Y+  + P +S+HE +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP2_DANRE (Receptor expression-enhancing protein 2 OS=Danio rerio GN=reep2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWD 273
            W  YWI+ A+ T  E   D + SWFP Y ELK+AF I+L SP T+G+  +Y+  + P +S  E +ID  I + + R +D
Sbjct:   38 WMMYWIVFALFTTAETITDMLLSWFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEREIDEYITQAKDRSYD 116          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP4_PONAB (Receptor expression-enhancing protein 4 OS=Pongo abelii GN=REEP4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.855e-13
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+    E   D   SWFP Y E+K+AF ++L SP T+G   +Y+  + P +S+HE +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALFMAAEIITDIFISWFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLSF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP4_HUMAN (Receptor expression-enhancing protein 4 OS=Homo sapiens GN=REEP4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+    E   D   SWFP Y E+K+AF ++L SP T+G   +Y+  + P +S+HE +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALFMAAEIVTDIFISWFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLSF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP2_MOUSE (Receptor expression-enhancing protein 2 OS=Mus musculus GN=Reep2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWD 273
            W  YWI+ A  T  E   D I SWFP Y ELK+AF I+L SP T+G+  +Y+  + P +S  E +ID  I + R + ++
Sbjct:   38 WMMYWIVFAFFTTAETLTDIILSWFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYE 116          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP2_HUMAN (Receptor expression-enhancing protein 2 OS=Homo sapiens GN=REEP2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWD 273
            W  YWI+ A  T  E   D + SWFP Y ELK+AF I+L SP T+G+  +Y+  + P +S  E +ID  I + R + ++
Sbjct:   38 WMMYWIVFAFFTTAETLTDIVLSWFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYE 116          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP2_BOVIN (Receptor expression-enhancing protein 2 OS=Bos taurus GN=REEP2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWD 273
            W  YWI+ A  T  E   D + SWFP Y ELK+AF I+L SP T+G+  +Y+  + P +S  E +ID  I + R + ++
Sbjct:   38 WMMYWIVFAFFTTAETLTDIVLSWFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYE 116          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: YSV4_CAEEL (Uncharacterized protein T19C3.4 OS=Caenorhabditis elegans GN=T19C3.4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAI-ASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDID 237
            W  YWI+ A+ + LE  LD + A WFP Y +LK+ F  +L SP T+G   +Y+  + P +++HE DID
Sbjct:   37 WMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFWLLSPWTKGASILYRKWVHPTLNRHEKDID 104          
The following BLAST results are available for this feature:
BLAST of FC876272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
REEP4_RAT1.014e-1336.90Receptor expression-enhancing protein 4 OS=Rattus ... [more]
REEP4_MOUSE1.730e-1336.90Receptor expression-enhancing protein 4 OS=Mus mus... [more]
REEP2_DANRE1.730e-1341.77Receptor expression-enhancing protein 2 OS=Danio r... [more]
REEP4_PONAB3.855e-1335.71Receptor expression-enhancing protein 4 OS=Pongo a... [more]
REEP4_HUMAN5.034e-1335.71Receptor expression-enhancing protein 4 OS=Homo sa... [more]
REEP2_MOUSE5.034e-1341.77Receptor expression-enhancing protein 2 OS=Mus mus... [more]
REEP2_HUMAN6.575e-1340.51Receptor expression-enhancing protein 2 OS=Homo sa... [more]
REEP2_BOVIN6.575e-1340.51Receptor expression-enhancing protein 2 OS=Bos tau... [more]
YSV4_CAEEL6.154e-1142.65Uncharacterized protein T19C3.4 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F11EF DevOvary1 Citrus clementina cDNA clone C32002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876272 ID=FC876272; Name=FC876272; organism=Citrus clementina; type=EST; length=473bp
GGAGAAGACAGGGTTGAGATAGACCAACTCAGGTTCTGGTGCAAATATTG
GATCCTTGTGGCAATGTTGACAGTTCTTGAGAGGTTTCTTGATGCAATTG
CTTCATGGTTTCCGATGTATGGCGAGCTGAAACTGGCATTTTTCATCTAC
TTGTGGTCTCCAAAGACACAGGGAACTGGGTTTGTTTATCAAAGTGTGTT
GAGGCCTTACGTGTCGAAGCACGAAACGGACATTGATAGAAGGATTCTGG
AATTGAGAGCAAGACTGTGGGATCTGGCTATTTACTATTGGCAAAATTGC
GCAGAACTGAGTCAAGAGAAATTCTTTGACATAATCAAGTTCTTGGCTGG
CCAATCTGCTAGGTTCTCTAACGCCCCTGCCCATGAGAATCAGAAACACA
ACGGTGAGAAGCAGCATGCACCGAGCGCGCCGCCGCCACCGGAAAACGGG
TTTAACTCACCCAGAACGCCAAA
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