FC876273

Overview
NameFC876273
Unique NameFC876273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14965 contig Ccv1_Contig14965:6..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPN 458
            A QLA  +VLPM +++  EL + +II   G    +S ++IA+ LPT N DAP M+DRILRLL+ YSVV CS+     +R Y L  V KY   N
Sbjct:    4 AMQLASASVLPMVLKSAIELDLLEII--RGQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQRVYGLAPVCKYLTKN 94          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-14
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  207 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 452
            LPMA++A  EL +F+II +AGP A+LS SDI A++PTKN  A   LDRILR+L + S++  S   SG  R Y LN  S+  V
Sbjct:   51 LPMALRAAIELNVFEIISQAGPDAQLSPSDIVAKIPTKNPSAAISLDRILRMLGASSILSVSTTKSG--RVYGLNEESRCLV 130          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.098e-14
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  156 ERDQSFACANQLAMGT--VLPMAMQAVYELGIFQIIDKAGP-GAKLSASDIAAQLP--TKNKDAPTMLDRILRLLASYSVVEC---SLDGSGARRRYSLNSVSKYYVPN 458
            E+ +  AC + + + T  V P  + A  +L +F+II KA P GA +S S+IA++LP  T++ D P  LDR+LRLLASYSV+     +++  GA R Y L+ V KY VP+
Sbjct:   18 EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 126          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  156 ERDQSFA-CANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYVPN 458
            ++D+  A  A  LA     PM +++ +EL I  I  KAG G  +S S+IA+Q+  KN +AP +LDR+LRLLAS+SV+ C L     G++R Y    +  Y   N
Sbjct:   16 DKDEQLAGLAVTLANAAAFPMILKSAFELKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQRVYGPAPLCNYLASN 119          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAK-LSASDIAAQLPTK--NKDAPTMLDRILRLLASYSVVECSLDGSGAR--RRYSLNSVSKYYVPN 458
            A QLA  ++LPM ++   ELG+ +++    P  K L+  ++ A+LP    N DA  M+DR+LRLLASY VV+C ++    +  RRYS   V K+  PN
Sbjct:   20 AMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPN 117          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  135 MGSIVDGERDQSFAC--ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAK--LSASDIAAQLPTKNKD---APTMLDRILRLLASYSVVECSLDGSGAR--RRYSLNSVSKYYVPN 458
            + ++VD E     AC  A QLA  ++LPM ++   ELG+ +++ K   G K  L+  ++ A++P    D   A  M+DR+LRLLASY VV C ++    R  RRYS   V K+  PN
Sbjct:    8 VAAVVDEE-----ACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPN 119          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKA------GPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSL-DGSGAR--RRYSLNSVSKYYVPN 458
            A QLA  ++LPM ++   ELG+ + +  A      G  A L+ +++A +LP+K N  A  M+DR+LRLLASY+VV C + +G+  +  RRY+   V K+  PN
Sbjct:   20 ALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPN 122          
The following BLAST results are available for this feature:
BLAST of FC876273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
OMT1_CHRAE1.408e-1447.31Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
SMT_COPJA4.098e-1451.22(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA4.098e-1443.12Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
IMT1_MESCR4.531e-1340.38Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
COMT1_SACOF4.531e-1340.82Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
COMT1_MAIZE1.722e-1238.46Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_ORYSJ5.538e-1139.81Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F12EF DevOvary1 Citrus clementina cDNA clone C32002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876273 ID=FC876273; Name=FC876273; organism=Citrus clementina; type=EST; length=459bp
GGTGATTGGATACTGTAGAAAACACATGGTTGGCATGCTTCTCTTGTTAG
CTTTGAATGAACAAGTCTTTATTTCAAACCCGCTGGCCAAATAAGAAACC
CCTCAAAGCGTAGAAGAAATTCAAGAAACTTAAAATGGGTTCTATAGTTG
ATGGAGAAAGAGACCAAAGCTTTGCATGTGCTAATCAATTGGCGATGGGT
ACAGTGCTACCCATGGCCATGCAAGCGGTGTATGAGCTAGGCATTTTCCA
GATCATAGACAAAGCTGGTCCTGGTGCAAAGCTCTCTGCTTCAGATATTG
CAGCCCAGTTGCCCACCAAGAACAAAGACGCACCCACGATGCTGGATCGG
ATTCTCAGGCTTCTGGCTAGCTACAGTGTTGTTGAGTGCTCACTTGATGG
TTCTGGTGCCCGGAGACGATATAGTTTAAATTCTGTCTCCAAATACTATG
TGCCTAACA
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