FC876277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 3.587e-48 Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRK+E PRHG LGFLPRKRAA RG+VKAFPKDD SKP LT+FLGYKAGMT IVRD+++PGSK HK+E EAV++++T Y++TPRGLRSL TVWA+HLS+E++RRFYKNW +G +I+ +L +IKKYASV Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDG-AAIERELARIKKYASV 158
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 6.119e-48 Identity = 93/159 (58.49%), Postives = 114/159 (71.70%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRK+E PRHG LGFLPRKRAA RG+VK+FPKDD +KP LT+FLGYKAGM+ IVRD+++PGSK HK+E EAVT+++T YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW +Y E + +L +IKKYASV Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--ENGAQVDRELARIKKYASV 157
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3) HSP 1 Score: 182.57 bits (462), Expect = 9.769e-46 Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HLS+E RRRFYK+W ++ +GKK +Q +KKY V Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3) HSP 1 Score: 182.185 bits (461), Expect = 1.276e-45 Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HLS+E RRRFYK+W ++ +GKK +Q +KKY V Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20 Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 406 MS RKF PRHGSL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR + +K +E +AVT++E Y KT GLR L V A ++S+ V RR + N Sbjct: 1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGN 122
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17 Identity = 61/154 (39.61%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEK 499 M RK PR GSLGF PRKRA+R +VK +P+ D KP L AFLGY+AGMTH+ ++PG KE VTI+ET Y P RG SL WAQ E E++RR ++TD+ KS++ +L+K Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------------STLGSFDTDKMLKSLEERLDK 140
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13 Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394 + PR GS+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E Y KT RGL++L V A +++RR+ Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRK 112
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IET Y KT G++ VW+ +L + + RR Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRR 111
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13 Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 2 Query: 68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRR 391 PR GS+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S +E VT++ET Y TP G R L VW + E++ R Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLER 112
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13 Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 2 Query: 56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S +E VT++ET Y KT +GL++L VWA+ L ++ R+ Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRK 113 The following BLAST results are available for this feature:
BLAST of FC876277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876277 ID=FC876277; Name=FC876277; organism=Citrus clementina; type=EST; length=520bpback to top |