FC876277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4) HSP 1 Score: 256.914 bits (655), Expect = 4.076e-68 Identity = 124/159 (77.99%), Postives = 133/159 (83.65%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET YVKTPRGLRSL TVWAQHLSEE+RRRFYKNW ++ET+EGKK IQ+QLEK+KKY SV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5) HSP 1 Score: 254.603 bits (649), Expect = 2.023e-67 Identity = 122/159 (76.73%), Postives = 132/159 (83.02%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET YVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW QY++++GKK IQAQLEK+KKYA+V Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 5.886e-67 Identity = 120/159 (75.47%), Postives = 132/159 (83.02%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET YVKTPRGLRSLN+VWAQHLSEEVRRRFYKNWC +Y++D GKK IQ QLEK+KKYAS+ Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASI 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2) HSP 1 Score: 210.69 bits (535), Expect = 3.350e-54 Identity = 106/159 (66.67%), Postives = 119/159 (74.84%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+++PGSK+HK+E EAVTIIET YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW +Y E +SI +LE+IKKY SV Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSV 157
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2) HSP 1 Score: 210.305 bits (534), Expect = 4.375e-54 Identity = 105/159 (66.04%), Postives = 119/159 (74.84%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+++PGSK+HK+E EAVT+IET YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW +Y E +SI +LE+IKKY SV Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSV 157
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3) HSP 1 Score: 202.601 bits (514), Expect = 9.122e-52 Identity = 95/159 (59.75%), Postives = 117/159 (73.58%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ D GKK ++ +KKY V Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 1.191e-51 Identity = 94/159 (59.12%), Postives = 118/159 (74.21%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ ++GKK ++ +KKY V Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQV 159
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 1.556e-51 Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP LTA +GYKAGMT +VRD+++PG+K+HKKE EAVTIIET Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW ++ + G SI +LE+IKKY +V Sbjct: 1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTV 158
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 4.527e-51 Identity = 100/160 (62.50%), Postives = 117/160 (73.12%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+EKPGSK+HKKE EAVTIIE YV+T +GL++ TVWAQHLS+ RRR YKNW QYET+EGKKSI+A L+ IKK SV Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSV 160
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 7.723e-51 Identity = 94/159 (59.12%), Postives = 116/159 (72.96%), Query Frame = 2 Query: 44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV 520 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ D GKK ++ +KKY V Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQV 159 The following BLAST results are available for this feature:
BLAST of FC876277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876277 ID=FC876277; Name=FC876277; organism=Citrus clementina; type=EST; length=520bpback to top |