FC876277

Overview
NameFC876277
Unique NameFC876277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:22..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 42/113 (37.17%), Postives = 55/113 (48.67%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394
            K   PR GSL + PRKRA     +++++PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L + V RR
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARR 111          
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 40/113 (35.40%), Postives = 57/113 (50.44%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394
            K   PR GSL F PRKRA R   K++++P+ +  K   L AF  YKAG TH +     P S    ++    VT++E           Y K  +GL++L  VWA    +E+ R+
Sbjct:    4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRK 113          
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRR 391
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     R++  VWA  L + + R
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHR 116          
BLAST of FC876277 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRR 394
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRR 113          
The following BLAST results are available for this feature:
BLAST of FC876277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL3_PYRKO4.580e-1137.1750S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_META34.580e-1135.4050S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_PYRAE5.982e-1135.9650S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METMA7.813e-1133.9450S ribosomal protein L3P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionC32002G08EF DevOvary1 Citrus clementina cDNA clone C32002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876277 ID=FC876277; Name=FC876277; organism=Citrus clementina; type=EST; length=520bp
GAGAGCACACGAGTCAGTCGCCGCAGCAGCTCAGAGAAGGAGAATGTCTC
ACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGG
AAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGA
CCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGA
TGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAG
AAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGT
GGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGA
ACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTAC
AAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCA
GTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGA
TCAAGAAGTATGCATCTGTT
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