FC876785

Overview
NameFC876785
Unique NameFC876785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFIGLPDSIFLDL 669
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  + S  K GF+YLL PTPELWTL L HRTQI+Y  DI+ +   L +  G  V              +R V P G ++TF++H  R  +A ++F        V     +  RD+   GF D  + + D+IFLDL
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDTEVKV-DAIFLDL 187          
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_YARLI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 65/178 (36.52%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFIGL-PDSIFLDL 669
            I++GDLV+ +     +K + V +    F  R+GAF H   D  G   GSM   +K GF++L+ PTPELWTL L HRTQI+Y  D S+++  L++ PG  V              +R+    G VY+++FHE+R   A+++FER  +++ +    RD+   GF  E I +   ++FLDL
Sbjct:    9 IEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SKQGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAISRSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPTH-RDVCNDGFDIENIDVNATAVFLDL 182          
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 60/165 (36.36%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGF 624
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +      + K  FV+++ P+PELWTL L HRTQI+Y  D S+++  L   P   V              AR+V   G +Y+++FH  R   A E+F+  G+    T+   RD+   GF
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIITHRDVCKDGF 173          
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_ASHGO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF 624
            I EGDLV+V+     +K +++     F  R+G+F H D +G+P+GS +      SN+ GF+++L PTPELWTL L HRTQI+Y  D S+++  L   P   V              AR V   G +++++FH  R   A  +F+  G+     VT+  RD+  +GF
Sbjct:   11 IAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSNRFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAFARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGF 173          
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_ASPFU (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus fumigatus GN=trm61 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 70/244 (28.69%), Postives = 101/244 (41.39%), Query Frame = 1
Query:  157 GDLVIVYERHD----CMKAVKVCQNSAFQN------RFGAFKHSDWIGKPFGSMVF----------------------------SNK--------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV-------APT------GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFIGLP--------DSIFLDL 669
            GDL +++ R D     +  ++  +N  ++       RFG+F HS  I +P+GS +                             SNK               GF++LL PTPELWT  L HRTQ++Y  D S+++  L + PG  +               RAV       AP       G V +F+FH QRA   RE+    G+ + V V  RD+   GF    +G P        ++IFLDL
Sbjct:   15 GDLALLHLRRDQTIPTILKLEDDENQGYKEGKVTNTRFGSFPHSTLIDQPWGSQIVASVVDTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRLGKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGF---LLGDPKTGKSPKANAIFLDL 255          
BLAST of FC876785 vs. ExPASy Swiss-Prot
Match: TRM61_ASPOR (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus oryzae GN=trm61 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 60/204 (29.41%), Postives = 82/204 (40.20%), Query Frame = 1
Query:  235 RFGAFKHSDWIGKPFGSMVFSNK--------------------------------------GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAV--------APT-----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFIGLP--------DSIFLDL 669
            RFG+F H     +P+GS + ++K                                       GF++LL PTPELWT  L HRTQ++Y  D S+++  L   PG  V               RAV         PT     G V +F+FH QRA   R +  + G+   V V  RD+   GF    +G P        ++IFLDL
Sbjct:   51 RFGSFPHITLCDQPWGSQIIASKVDTGSRGRTQKMKRKADELDSSTQAEDKPSPQTPVAASSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAGAGSGSFTHASVRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVEVTHRDVYEDGF---LLGDPKTGKSPKANAIFLDL 251          
The following BLAST results are available for this feature:
BLAST of FC876785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_SCHPO6.106e-2435.20tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YARLI3.031e-2336.52tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANGA5.169e-2336.36tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASHGO1.504e-2235.54tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPFU4.386e-1428.69tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPOR2.177e-1329.41tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3AG05RM1 EHR Citrus clementina cDNA clone KN0AAN3AG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876785 ID=FC876785; Name=FC876785; organism=Citrus clementina; type=EST; length=669bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATAGAACTCAGATACTTTACATTGCAGATATTAGCTTTG
TCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAGCTCCTAC
AGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAGGAGTGAGCAGTTTTGTTACTGTGGGTGTT
AGAGATATCCAGGGTCAAGGATTTCCTGATGAATTTATTGGGTTACCTGA
TTCTATATTTCTGGACCTA
back to top