FC877995

Overview
NameFC877995
Unique NameFC877995
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877995 vs. ExPASy Swiss-Prot
Match: CHIT2_DROME (Probable chitinase 2 OS=Drosophila melanogaster GN=Cht2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 76/296 (25.68%), Postives = 113/296 (38.18%), Query Frame = 1
Query:    1 KNKNPSITMLLSIGEGRHTNYSIYSSMVRNSSHRKSFIDSSIRIARLYGFQGLDFAWTAP----NTSTDMFNIGLLFDEWRIAATKLEAINSSRQQSPLILTARFRYSPPA--NSYLLNSMQRNLNWVHAVTANYYK--PSSTNFTAPPAALHGSSSGGFAKSTDQVLKAWIERGLSADKLAMSLPFYGYAWRLVKP---EDNGIGAAATGPALTNDGLVTYRTIKNHIKNYA---------PNVQVMYNSTYVVNYFSTGTVWFGFDDVEAVRAKIAYAKEKRLLGYYVWRVPFD 828
            K  +P + + L+IG G +   + YS++V N+  R  F+       R Y F GLD  W  P        D  N  LL  E R              +  L+LT+    S      +Y +  + R L+++H +  +Y+        + AP  A           S D +LK     G   +KL M LPFYG  ++ +      D   G    GP    DG + Y  I   + N              QV+  S    N F+       +D   ++  K+ +A  KRL G  VW V  D
Sbjct:  112 KRSHPHLKVSLAIG-GWNEGSANYSTLVANNLLRGRFVKQVSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELR----------EEFDEHGLLLTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRRVGYNAPLTA-PADDPLSVKFSIDYLLKL----GAPPEKLVMGLPFYGRTFKTLASGFLNDVSEGVGFKGPYTREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSER--NVFTQEINVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTD 389          
The following BLAST results are available for this feature:
BLAST of FC877995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHIT2_DROME5.044e-1125.68Probable chitinase 2 OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE01RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877995 ID=FC877995; Name=FC877995; organism=Citrus clementina; type=EST; length=830bp
AAGAACAAGAACCCATCAATCACTATGCTTCTCTCCATTGGAGAAGGAAG
ACATACAAACTATTCTATATATTCTTCAATGGTGAGAAATTCTTCTCACA
GAAAATCTTTCATCGACTCTTCAATAAGAATAGCTAGGCTTTATGGCTTT
CAGGGCCTAGATTTTGCTTGGACAGCTCCCAACACAAGCACCGATATGTT
CAATATTGGTTTACTTTTTGACGAGTGGCGAATTGCTGCTACAAAATTAG
AGGCAATAAACTCTAGTCGCCAGCAATCCCCGCTGATTTTGACCGCAAGA
TTTCGTTATTCACCACCAGCGAATTCATATCTTTTGAATTCGATGCAACG
AAACTTGAATTGGGTTCATGCAGTTACTGCTAACTACTACAAGCCTTCGT
CAACAAACTTCACTGCGCCACCTGCGGCTCTCCATGGCTCAAGTAGCGGC
GGCTTTGCTAAAAGTACCGATCAGGTTTTAAAGGCATGGATTGAGAGAGG
GCTATCGGCTGATAAGTTGGCTATGTCTTTGCCTTTCTATGGCTATGCAT
GGAGGCTTGTGAAACCTGAAGACAATGGTATTGGAGCAGCAGCAACAGGA
CCAGCTTTGACTAATGATGGCCTTGTGACCTATAGGACTATCAAGAATCA
CATCAAGAACTATGCTCCTAATGTTCAAGTTATGTACAATTCAACTTATG
TGGTGAATTACTTCTCCACTGGGACGGTTTGGTTTGGTTTTGATGATGTG
GAGGCTGTTAGAGCTAAGATCGCCTATGCCAAAGAGAAGAGATTGCTTGG
TTACTATGTGTGGCGAGTTCCTTTTGATGA
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