FC920191

Overview
NameFC920191
Unique NameFC920191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig442 contig Ccv1_Contig442:525..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 44/126 (34.92%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGG-SVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 377
            + + G+  KK  + E+++ GG SV +++++A     KQI      +  + +D++ +TKGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N ++ K G   +
Sbjct:  142 KDVPGIPSKKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEE 267          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            + G+ +K   LME+ + GG++ QKV+FA      ++ +  V    E  D+  +T GKG +G V RWG+    RK  RG +K  +  +G W+P  V + V + GQ GY  RT+ NK+I K+G+
Sbjct:  152 LTGVPKKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIGAGEYADVTAITTGKGTQGPVKRWGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGE 273          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSA 392
            + G+ +K   +ME  V+G  V  K ++A       + I  VF   +++D+  +T G G +G V RWG+  +  K  R   LR+V  +G W PA VS+ V +AGQ GYH RT+ NK+I K+     E + A
Sbjct:  152 LTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDEVNPA 281          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGG-SVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK 368
            + + G+  KK  + E+++ GG SV ++ ++A     K I  +   +  + +D++ VTKGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N ++ K  K
Sbjct:  142 KDVPGIPSKKPEIFELRIGGGNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSK 264          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNGGSVAQKV-DFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSF-TVARAGQNGYHHRTEMNKKI 353
            GL +KK  L+EI+V G S   K+ D+A       I ++ VF++ +++D+I VTKGKG++GV+ RWGV  LPR  K  +G R+   IGA    R +F    +AGQ G+H RTE NK+I
Sbjct:  157 GLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRI 270          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 377
            M+ + +K   +ME +V GG++  +V+F         +  I  +F+  E +D  GVTKGKG +G V R+GV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++ ++G   +
Sbjct:  152 MRNIPKKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLDAAGVTKGKGTQGPVKRFGVQKRKGKHARQGYRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIEIGNGDE 278          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQ--IPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 377
            G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +
Sbjct:  151 GVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDE 275          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   15 GLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQ--IPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQ 377
            G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +
Sbjct:  151 GVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDE 275          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 3
Query:    9 MKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYK 359
            + G+  K   + EI++ G ++  ++ +A       I      +    +D+I VTKGKG++GVV R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+H RT  N +I K
Sbjct:  143 VSGVPSKTPEIFEIRIGGSTIENRIKYAKERLGSNISFSDFSKPGNFVDVIAVTKGKGFQGVVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK 259          
BLAST of FC920191 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 43/128 (33.59%), Postives = 73/128 (57.03%), Query Frame = 3
Query:    3 RKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQE 380
            + + G+ +K   +ME  ++   +  K +++       + +  VF+   ++D   +T GKG +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK+I K+G   +E
Sbjct:  150 KSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE 277          
The following BLAST results are available for this feature:
BLAST of FC920191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_THEAC2.564e-1834.9250S ribosomal protein L3P OS=Thermoplasma acidophi... [more]
RL3_METPE3.348e-1836.8950S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_METBU3.348e-1836.1550S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_THEVO7.459e-1836.5950S ribosomal protein L3P OS=Thermoplasma volcaniu... [more]
RL3_AERPE7.459e-1844.4450S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_HALWD9.742e-1836.2250S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_HALSA1.662e-1737.6050S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS31.662e-1737.6050S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_PICTO2.170e-1736.7550S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_METAC6.314e-1733.5950S ribosomal protein L3P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionC32005B10EF RVDevelop1 Citrus clementina cDNA clone C32005B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920191 ID=FC920191; Name=FC920191; organism=Citrus clementina; type=EST; length=723bp
GCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCTGATGGAGATC
CAGGTCAATGGTGGATCAGTTGCCCAGAAGGTTGACTTTGCTTATGGTTT
CTTCGAGAAACAGATTCCTATTGATGCTGTGTTCCAGAAAGATGAGATGA
TTGACATTATTGGTGTGACCAAAGGTAAGGGATATGAGGGTGTTGTTACT
CGTTGGGGTGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAA
GGTTGCTTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTG
CTAGAGCTGGGCAGAACGGTTACCATCACCGTACAGAGATGAACAAGAAA
ATTTACAAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGA
ATTTGACAGGTCGGTATATCTGTTATCTTCTTTAATGGGTTCTTTTTCTT
CTTGAGATCTATATTGTTTATTTTAGGTGTATGTGAATTGTTAAGTTGGG
TGAGTTCGAGTAAGGTTGGGTAAGAGCGGGTGGGAACTAGTTGATATTTT
TCCAACCTTTTTTGTTGACCTTTTCTGACCTTTGTTGGCCCCTGCACTTA
AAAAACCGCCAGGTACATGTTTGGCTCCATTTTGTGGCTGAATATTTTTT
TTTATTGTATTATATAGTCATTTCATCATTTAAAGCATGTGGACAGCTGT
CAAGACTTTGCAGTATTCATAGC
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