FC920417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAEHFLGSRMLEVKIATPKEE 653 K+ + G+ W+ D LR+Y +FG++ DC VM++ +TGRSRGFG++TF + + +S EH L ++++ K A P+EE Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREE 242
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13 Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAEHF-LGSRMLEVKIATPKEEMRAPPRKVS 680 K+ + G+ W D LR+Y SKFG++ +C+VM++ +T RSRGFG+VTFA L H L S+ ++ K+A P+ RA P+ V+ Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR---RAQPKMVT 107
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13 Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAEHF-LGSRMLEVKIATPKEEMRAPPRKVS 680 K+ + G+ W D LR+Y SKFG++ +C+VM++ +T RSRGFG+VTFA L H L S+ ++ K+A P+ RA P+ V+ Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPR---RAQPKMVT 107
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAEHFLGSRMLEVKIATPKEE 653 K+ + G+ WD D LREY K+G + D +MK+ +TGRSRGFG+++F + +H L ++++ K A P++E Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE 238
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11 Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFA-SAEDAKTALSAEHFLGSRMLEVKIATPKEEMRAPPRKVS 680 K+ + G+ W +GLREY +FG++++C+VM++ T RSRGFG+VTF A K + H L S+ ++ K+A P+ RA P+ V+ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR---RAQPKMVT 106
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11 Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFA-SAEDAKTALSAEHFLGSRMLEVKIATPKEEMRAPPRKVS 680 K+ + G+ W +GLREY +FG++++C+VM++ T RSRGFG+VTF A K + H L S+ ++ K+A P+ RA P+ V+ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR---RAQPKMVT 106
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11 Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 417 KLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFA-SAEDAKTALSAEHFLGSRMLEVKIATPKEEMRAPPRKVS 680 K+ + G+ W +GLREY +FG++++C+VM++ T RSRGFG+VTF A K + H L S+ ++ K+A P+ RA P+ V+ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR---RAQPKMVT 106
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 3 Query: 414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAP 665 +KL + G+ ++ D LRE+ K+G L DCVVM++ T RSRGFG+VT++ E+ A+ A H + R++E K A +E+ P Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 3 Query: 414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAP 665 +KL + G+ ++ D LRE+ K+G L DCVVM++ T RSRGFG+VT++ E+ A+ A H + R++E K A +E+ P Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119
BLAST of FC920417 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 3 Query: 414 KKLVVLGIPWDVDTDGLREYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASAEDAKTALSAE-HFLGSRMLEVKIATPKEEMRAP 665 +KL + G+ ++ D LRE+ K+G L DCVVM++ T RSRGFG+VT++ E+ A+ A H + R++E K A +E+ P Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP 119 The following BLAST results are available for this feature:
BLAST of FC920417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920417 ID=FC920417; Name=FC920417; organism=Citrus clementina; type=EST; length=680bpback to top |