FC920425

Overview
NameFC920425
Unique NameFC920425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920425_ssr21 microsatellite FC920425_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.351e-65
Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 3
Query:   90 LCFFSVAL---SLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            L FF++A    +   TA+   P V     WQ AHATFYGG+DASGTMGG CGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I
Sbjct:   10 LVFFAIAAVGCTQLTTADDAAPPV-----WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSI 192          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.351e-65
Identity = 126/192 (65.62%), Postives = 139/192 (72.40%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGP--WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            M L R+L   +VA        A    V AGG   W S  ATFYGGSDASGTMGGACGYGNLYS GYG +TAALSTALFNNG SCGACFE++CGG    C  G  A+  TATN CPPN+A   D GGWCNPPRPHFD+A P F ++AQ RAG+VPV YRRV C K+GGIRFTI G  YFNLVLVTNV GAGD+
Sbjct:    1 MELLRLLAVAAVA--------AMAAEVAAGGDSGWSSGSATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAV--TATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDV 181          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 8.756e-65
Identity = 112/158 (70.89%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAG 635
            W  AHATFYGG+DASGTMGGACGYG+LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTG 208          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.494e-64
Identity = 117/188 (62.23%), Postives = 136/188 (72.34%), Query Frame = 3
Query:   84 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG--DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            RML     A+   A   A   G      W  AHATFYGG+DASGTMGGACGYGNLY+QGYG  TAALSTALFN+GL+CG C++L C    D  WC PG  ++ ITATNFCPPN+  PSD+GGWCNPPRPHFD+A P + K+  YR GI+PV Y+RVPC K+GG+RFTING  YF LVL+TNV  AG I
Sbjct:    6 RMLAAVVCAIMPAAAMAAGGVGALEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPG-VSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSI 192          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.327e-64
Identity = 111/160 (69.38%), Postives = 127/160 (79.38%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W  AHATFYGG+DASGTMGGACGY +LYSQGYG   AALSTALFN+G SCG C+++ C     PQWC PG   + +TATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+RVPC K+GG+RFTING  YFNLVLVTNVA  G I
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSI 208          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.681e-64
Identity = 115/191 (60.21%), Postives = 143/191 (74.87%), Query Frame = 3
Query:   87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG----DPQWCNP--GNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            +L   S++ SL +++ A      A G W  AHATFYGG+DASGTMGGACGYGN Y QGYG +TAALS  +F +GLSCGACFEL+CGG    D + C P     +I++TAT+ CP N A P D GGWCNPP  HFDL+ P FL++A++++GIVPVSYRRV CR++GG+RFTING  YFNLVLV+NV GAGD+
Sbjct:    9 LLVLLSLSSSLSSSSAA------AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDV 193          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.157e-63
Identity = 112/160 (70.00%), Postives = 129/160 (80.62%), Query Frame = 3
Query:  162 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            GPW +AHATFYGG DASGTMGGACGYGNLYSQGYG+ TAALSTALF+ GLSCGACFEL C  DPQWC  G  +I++TATNFCPP        GG C+PP  HFDL+ P++ K+A Y++GI+PV YRRV C++ GGIRFTING  YFNLVLVTNV GAGD+
Sbjct:   36 GPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGR-SIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDV 186          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.070e-62
Identity = 116/193 (60.10%), Postives = 135/193 (69.95%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG-DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVR 647
            MA  RML   +   +L  TA+A          W  A ATFYGGSDASGTMGGACGYG+LY  GYG  TAALSTALFN G SCGACF + C     QWC PG  +I +TATNFCPPN+A   D GGWCNPPR HFD++ P +  +A YRAGIVPV+YRRVPC++ GGIRF +NG  YF LVLVTNV G+G + +
Sbjct:    1 MAAARMLVLLASLCALLLTASA--------AKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGT-SITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQ 184          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.312e-62
Identity = 110/184 (59.78%), Postives = 132/184 (71.74%), Query Frame = 3
Query:   99 FSVALSLFATANAKIP---GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            F VAL+    A  K+    G F  GPW+ AHATFYGG D SGT+ GACGY +   +GYGV T A+ST LF  G  CGAC+E+KC   P  C  G   +++TATN CPPN  Q +DNGGWCNPPR HFDL+MP FL++AQ +AGIVP+SYRRVPC K GGIR+TI G  YFNLV+V+NV GAGD+
Sbjct:   16 FLVALAAGDAAPPKVHRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDV 199          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 7.671e-61
Identity = 109/192 (56.77%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   72 MALFRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            M + R     + AL + + + A      A G W S  ATFYGG DASGTMGGACGYGNLY+QGYGV  AALSTALFN G SCG C+ + C     P+WC  G  A+ ITATN CPPN+A  +D+GGWCNPPRPHFD++ P +  +  YRAGIVPV Y++V C ++GG+RFT++GF YF LVL+TNVAG+G +
Sbjct:    1 MMVIRFFAVLAAALCITSASAA------AAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSV 185          
The following BLAST results are available for this feature:
BLAST of FC920425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXP14_ORYSJ1.351e-6563.49Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ORYSJ1.351e-6565.63Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ8.756e-6570.89Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ1.494e-6462.23Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.327e-6469.38Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ9.681e-6460.21Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH2.157e-6370.00Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA8_ORYSJ1.070e-6260.10Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP32_ORYSJ5.312e-6259.78Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ7.671e-6156.77Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008C01EF RVDevelop1 Citrus clementina cDNA clone C32008C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920425 ID=FC920425; Name=FC920425; organism=Citrus clementina; type=EST; length=649bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
back to top