FC920425

Overview
NameFC920425
Unique NameFC920425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920425_ssr21 microsatellite FC920425_ssr21:21..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14141 contig Ccv1_Contig14141:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.310e-57
Identity = 100/161 (62.11%), Postives = 123/161 (76.40%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVR 647
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQ 182          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.689e-56
Identity = 103/182 (56.59%), Postives = 127/182 (69.78%), Query Frame = 3
Query:  102 SVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGG--WCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            +V +SL A A   +   F    W  AHATFYG   AS TMGGACGYGNLY+ GYG +TAALST LF +G  CG C++++C G    C  G+PAI +TATN CPPN+A+  D GG  WCNPPR HFDL+ P F+++A +RAGIVPV YRRVPC + GG+RF + G  Y+ L  V NVAGAGD+
Sbjct:   16 AVIISL-AGAATTVDAKFRAMQWTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDV 195          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.162e-55
Identity = 97/163 (59.51%), Postives = 121/163 (74.23%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDP-QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            A   W SA ATFYGGSDASGTMGG+CGYGN+YS GYG NT ALS+AL+ +G SCGAC+ + C     +WC  G  ++ +TATN+CPPN+++  D GGWCNPPR HFD++ P +  +A Y +GIVPV Y R PCR+ GGIRF I G  Y+ LVLVTNVAG+G +
Sbjct:   23 AAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAV 184          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.390e-54
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDI 211          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.390e-54
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W  A ATFYG      T  GACGYGNL+ QGYG+ TAALSTALFN+G +CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR+PC K GG++F   G  YF +VL+ NV GAGDI
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDI 205          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.954e-54
Identity = 95/158 (60.13%), Postives = 118/158 (74.68%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W    ATFYG  +   T  GACGYG+L+ QGYG+ TAALSTALFNNG  CGAC+E+ C   PQWC PG  +I ITATNFCPP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV +RRVPC K GG++F I G  +F ++L  NV GAG +
Sbjct:   90 WGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPG--SIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAV 243          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.023e-53
Identity = 92/158 (58.23%), Postives = 117/158 (74.05%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG  ++ ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPG--SVKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDI 201          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 3.451e-53
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W  A ATFYG      T  GACGYG+L+ QGYG+ TAALSTALFN G +CGAC+++ C  DPQWC PG   I ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR+ C + GG++F   G  YF ++L  NV GAGDI
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPG--TIKITATNFCPPDYSK--TEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDI 208          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.451e-53
Identity = 96/164 (58.54%), Postives = 116/164 (70.73%), Query Frame = 3
Query:  156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            A   W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFN+G SCG C+ + C     P WC  G  AI +T TN+CPPN+  P   GGWCN  RPHFD++ P +  +  Y AGI+P+ Y++V C + GG+RFTINGF YF LVLVTN+AG+G I
Sbjct:   19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGK-AITVTGTNYCPPNYDLP--YGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSI 179          
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.922e-52
Identity = 96/160 (60.00%), Postives = 113/160 (70.62%), Query Frame = 3
Query:  168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641
            W    ATFYGG+D SGTMGGACGYGNLY QGYG+N AALST LFNNG SCG C+ + C  D  P  C  G  AI +T TNFCPPN+  P   GGWCN  RPHFD++ P +  +  Y AGIVP+ Y++V C + GG+RFTI G  YF LVLVTN+AG+G I
Sbjct:   23 WLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGT-AITVTGTNFCPPNYDLP--YGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSI 179          
The following BLAST results are available for this feature:
BLAST of FC920425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
EXP33_ORYSJ2.310e-5762.11Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ5.689e-5656.59Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXPA9_ORYSJ2.162e-5559.51Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP26_ARATH2.390e-5460.13Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH2.390e-5460.13Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP24_ARATH6.954e-5460.13Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP23_ARATH2.023e-5358.23Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ARATH3.451e-5358.86Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP19_ORYSJ3.451e-5358.54Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ2.922e-5260.00Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC32008C01EF RVDevelop1 Citrus clementina cDNA clone C32008C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920425 ID=FC920425; Name=FC920425; organism=Citrus clementina; type=EST; length=649bp
GATTCGCCACCTCCTGCGCGCTCACTCACTCACTCACTCAACTCTCTGTC
TCCCTCTCTTCAACTCCAACAATGGCTCTTTTCAGAATGCTCTGCTTTTT
CTCAGTGGCACTCTCCTTATTTGCGACGGCCAACGCCAAGATTCCCGGTG
TCTTCGCCGGTGGCCCCTGGCAATCGGCCCACGCCACTTTTTACGGTGGC
AGCGACGCTTCCGGCACTATGGGTGGTGCTTGTGGGTACGGGAATCTGTA
CAGCCAGGGCTATGGAGTGAACACGGCGGCTCTCAGTACGGCGCTGTTCA
ACAACGGCTTGAGCTGCGGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGAC
CCGCAATGGTGTAACCCGGGTAACCCGGCCATTCTGATCACGGCGACCAA
CTTTTGCCCCCCGAACTTCGCTCAGCCCTCCGATAATGGCGGGTGGTGCA
ACCCTCCTCGCCCTCATTTCGATCTGGCCATGCCTATGTTCCTCAAGCTC
GCCCAGTACCGCGCTGGTATCGTCCCCGTTTCTTACCGCAGGGTGCCCTG
CAGAAAGCGAGGCGGAATCAGATTCACAATTAACGGTTTCCGTTACTTCA
ACTTGGTCTTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGCGCGT
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