FC920425
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 2.315e-49 Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641 W ATFYG G GGACGY N Y TAALST LF +G CG C+EL+C P WCNPG+P+++IT TN CPPN+ P+D+GGWCNPPR HFD+A P FLKLAQ AGIVPV YRRVPC++ GG+RF + G Y+ L+ V NV GAGD+ Sbjct: 52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDV 210
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 3.696e-47 Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 3 Query: 156 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIV 644 A W ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C G P WC G AI +T TN+ GGWCN RP+FD++ P + + Y AGIVP+ Y++V C + GG+RF INGF YF LVLVTN+AG+G IV Sbjct: 19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIV 171
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 3.459e-45 Identity = 83/158 (52.53%), Postives = 107/158 (67.72%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641 W+ A AT+Y ++ +GGACGYG+L GYG+ T LS LF G CGACFEL+C D +WC PG +I++TATNFC PN+ D GG CNPP HF L + F K+A ++AG +PV YRR+ CRK G +RFT++G F VL+TNVAG+GDI Sbjct: 40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDI 196
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.928e-44 Identity = 82/161 (50.93%), Postives = 112/161 (69.57%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641 W AHAT+YG +D+ ++GGACGY N Y G+G +TAALS LF +G SCG C++++C DP+WC G A+ +TATNFCP N +N GWCN PR HFD++ P F ++A+ GIVPV YRRV C++RGG+RFT+ G FN+V+++NV G G + Sbjct: 27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSV 181
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 3.825e-44 Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 3 Query: 147 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641 G A W+SA A++Y +D +GGACG+G+L GYG+ T LSTALF G +CG C+E+KC D ++C PG +I++TATNFC PNF P+D GG CNPP HF L + F K+A ++AG++P+ YRRV C + GG+RF + G +F VL++NV GAGD+ Sbjct: 26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDV 188
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 7.975e-42 Identity = 84/160 (52.50%), Postives = 105/160 (65.62%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIV 644 W A A +YG GT + GACGYG+L GYG+ TAALSTALFN+G SCGAC+E+ C +PQ C G+ I ITAT+ CPP A WC P HFDL++PMF+K+AQ +A +VPV YRRVPC K GG++F + G +L NV GAGDI+ Sbjct: 45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGS--IKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDII 195
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.464e-40 Identity = 79/187 (42.25%), Postives = 113/187 (60.43%), Query Frame = 3 Query: 90 LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIV 644 LC F + LF A W+ A AT D S ++ GGACGYG+L + +A LS LFN G SCGAC E++C +WC G+P++++TAT+FCPPN SD GGWCN P+ H +L+ F +A+ RA ++P+ YRRV C +RGG+RF+++G +F VL++NV G++V Sbjct: 10 LCLFFILCRLFQAT--------AEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVV 188
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38 Identity = 89/176 (50.57%), Postives = 112/176 (63.64%), Query Frame = 3 Query: 135 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDIVR 647 AK+P V G GPW HATFYGG DASGT GGACGY + + GYG TAA+S ALF+NG CGAC+ELK GD +++TATN PP NG HFDL MP FL +A+ + G+VPVSYR+V C ++GGI++TI G +N+V+V NV GAGD+V+ Sbjct: 67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVK 223
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 7.724e-37 Identity = 69/140 (49.29%), Postives = 94/140 (67.14%), Query Frame = 3 Query: 222 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGDI 641 GGACGYG+L YG TA +S ALF G +CG C+E++C WC G+P +++TAT+FC PN D GGWCN P+ HF+++ FL++A+ +A IVPV +RRV C + GG+RFTI G F VL+TNVA G++ Sbjct: 52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEV 191
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18 Identity = 62/196 (31.63%), Postives = 99/196 (50.51%), Query Frame = 3 Query: 87 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDI 641 ++ F ++A + ++ A + W AT+YG ++ SGT GGACGY G++ + AA S +++ +G CG+C+++KC G+P C+ G P + + T+ CP GG C HFDL+ F +A+ AG +PV Y RVPC+ +G R +Y+ VLV + G GD+ Sbjct: 11 IVAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDL 194 The following BLAST results are available for this feature:
BLAST of FC920425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920425 ID=FC920425; Name=FC920425; organism=Citrus clementina; type=EST; length=649bpback to top |