FC920425
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17 Identity = 57/171 (33.33%), Postives = 85/171 (49.71%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFR--YFNLVLVTNVAGAGDI 641 G W S AT+YGG G+ GGACGY + Q + AA +LF NG CG+C+++KC G+ + C+ G P + + T+ CP GG C HFD++ F +A AG++ + Y+RVPCR + F ++ Y+ +LV G GD+ Sbjct: 42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDL 200
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16 Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 641 W + AT+YG ++ +G+ GGACGY G ++ + AA S +++ +GL CG+C+++KC G+ C+ GNP + + T+ CP GG C HFDL+ F +A Q R AG++ + Y RVPC GG++ T + YF VLV G GD+ Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYF-AVLVKYENGDGDL 193
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15 Identity = 60/171 (35.09%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA------QYR-AGIVPVSYRRVPCRKRGGIRFTI-----NGFRYFNLVLVTNVAGAGDI 641 W + AT+YG ++ +G+ GGACGY Q + AA S +++ +GL CG+C+++KC G+ C+ GNP + + T+ CP GG C HFDL+ F +A Q R AG++ + Y RVPC GG+ T + YF VLV G GD+ Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDL 193
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15 Identity = 61/190 (32.11%), Postives = 89/190 (46.84%), Query Frame = 3 Query: 105 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 641 + S AT N + + W A AT+YG + G+ GGACGYG L + A++ LF NG CGAC++++C D C+ A+ + T+ CP C+ HFDL+ +F +LA G++PV YRR C+ RG I F +N ++ +LV G GDI Sbjct: 19 IGSSALATTNRHV----SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDI 190
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15 Identity = 66/201 (32.84%), Postives = 90/201 (44.78%), Query Frame = 3 Query: 78 LFRMLCFFSV--ALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 641 L R + F S+ A +F + A W A AT+YG +D G+ GGACGYG L A+S LF G CGAC++++C D C+ A+ + T+ CP GG C R HFDL+ F +LA G + V YRR C+ G I F +N ++ +LV G GDI Sbjct: 13 LIRSVLFVSLLSAAFVFDSGEAGAAHRVVDPEWHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDI 201
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15 Identity = 64/179 (35.75%), Postives = 87/179 (48.60%), Query Frame = 3 Query: 144 PGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI----NGFRYFNLVLVTNVAGAGDI 641 P V W +A AT+YG + G+ GGACGY Q + AA S +L+ G CGAC+E+KC + C+ G PA ++ T+ CP GG C HFD++ +A+ AGI+ V YRRVPC+ G I F + N F YF VL+ G GD+ Sbjct: 56 PSVTVTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CS-GQPATVV-ITDECP---------GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPF-YFE-VLIEFEDGDGDL 220
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14 Identity = 58/169 (34.32%), Postives = 83/169 (49.11%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRA-------GIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 641 W+ A AT+YG ++ G+ GGACGYG+L ++S LF +G CGAC+++KC D C+ A+ + T+ CP GG C R HFDL+ F ++A A G + V YRR C+ G I F +N ++ +LV G GDI Sbjct: 48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDI 204
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14 Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG-GIRFTI--NGFRYFNLVLVTNVAGAGDIVR 647 GG W +A AT+YG + +G GGACG+ N+ + T+ + LF +G CG+C++++C G P C+ ++IT N+ P + HFDL+ F +A+ AGI+ + +RRVPC+ G + F + + +LV G GD+V+ Sbjct: 89 GGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPA-CSGLPETVIITDMNYYPVSLY--------------HFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQ 248
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14 Identity = 65/199 (32.66%), Postives = 92/199 (46.23%), Query Frame = 3 Query: 81 FRMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQG--YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDL---AMPMFLKLAQ----YRAGIVPVSYRRVPCRKRGG---IRFTINGFRYFNLVLVTNVAGAGDI 641 F +L F+V+L N I +G +A T+YG +G+ GGACGYG+ + Y + +A +LFNNG CG C+++ C G P C+ G+P I +T T+ CP GG C H DL AM K Q AG++ V+Y+R C RG R Y+ +V G GD+ Sbjct: 8 FALLALFAVSLKFCYCQNETIDVAGSG----TAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAG-GPSLFNNGKGCGTCYQVVCIGHPA-CS-GSP-ITVTITDECP---------GGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDL 189
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13 Identity = 55/169 (32.54%), Postives = 81/169 (47.93%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA-------QYRAGIVPVSYRRVPCRKRG-GIRFTIN--GFRYFNLVLVTNVAGAGDI 641 W A AT+YG ++ G+ GGACGYG+L + + A+S LF G CGAC++++C D C+ A+ I AT+ P +G HFDL+ F +A G++ + YRR C+ RG I F +N Y+ +L+ G GDI Sbjct: 40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRC-LDKTICS--KRAVTIIATDQSP--------SGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDI 197 The following BLAST results are available for this feature:
BLAST of FC920425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920425 ID=FC920425; Name=FC920425; organism=Citrus clementina; type=EST; length=649bpback to top |