FC920425
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11 Identity = 54/170 (31.76%), Postives = 74/170 (43.53%), Query Frame = 3 Query: 72 MALFRMLCF-FSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCR 554 MA + CF F V L+ F + K W +A T+YG + GT GGACGYG+ ++ Y +A +LF +G CGAC+ LKC D C ++I SD C HFDL+ F LA+ G + VSY+R C+ Sbjct: 1 MASSSLKCFSFIVVLTTFFAISLKPCYCHNKTHWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLKC--DHPLCTKKPIKVMI-------------SDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCK 155
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB1_ORYSJ (Expansin-B1 OS=Oryza sativa subsp. japonica GN=EXPB1a PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11 Identity = 54/176 (30.68%), Postives = 81/176 (46.02%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIV 644 G W A AT+YG +G GGACGY ++ + G+N+ + +F +G CG+CFE+KC P+ C+ I +T N P HFDL+ F +A+ +AGI+ +RRV C+ + T + + N +LV VAG GD+V Sbjct: 38 GDKWLEAKATWYGAPKGAGPKDNGGACGYKDVDKAPFLGMNSCG-NDPIFKDGKGCGSCFEIKC-SKPEACSDKPALIHVTDMNDEP--------------IAAYHFDLSGLAFGAMAKDGKDEELRKAGIIDTQFRRVKCKYPADTKITFHIEKASNPNYLALLVKYVAGDGDVV 197
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11 Identity = 55/177 (31.07%), Postives = 82/177 (46.33%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGY-GVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVR 647 G W A T+YG +G GGACGY ++ + G+N+ + +F +G CG+CFE+KC P+ C+ I IT N P HFDL+ F +A+ +AGI+ + +RRV C+ G + T + + N VLV V G GD+V+ Sbjct: 38 GKQWLEARGTWYGKPKGAGPDDNGGACGYKDIDKAPFLGMNSCG-NDPIFKDGKGCGSCFEVKC-SKPEACSDKPVIIHITDMNTEP--------------IAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYFAVLVKYVGGDGDVVK 198
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11 Identity = 55/176 (31.25%), Postives = 82/176 (46.59%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIV 644 G W A +T+YG +G GGACGY N+ + T +T +F +G CG+CFE+KC P+ C+ A+ +T T+ DN P P HFDL+ F +A+ AG + + +RRV C+ + T + + N +LV V G GD+V Sbjct: 38 GDKWLDAKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKC-TKPESCS--GEAVTVTITD----------DNE---EPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVV 197
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11 Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 3 Query: 168 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRG---GIRFTINGFRYFNLVLVTNVAGAGDIVR 647 W +A AT+YG + +G GGACG+ + + T+ + L+ G CG+C+ ++C +P C+ + IT N+ P + + HFDL+ F +LA+ RAGI+ V + RVPC G G + VLV G GD+ + Sbjct: 48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQ 204
BLAST of FC920425 vs. ExPASy Swiss-Prot
Match: MPAC1_CYNDA (Major pollen allergen Cyn d 1 OS=Cynodon dactylon GN=CYND1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11 Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 3 Query: 159 GGPWQSAHATFYGGSD---ASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-------YRAGIVPVSYRRVPCRKRGGIRFTIN----GFRYFNLVLVTNVAGAGDIV 644 G W A ATFYG + A GGACGY ++ + TA + +F +GL C AC+E+KC +P C+ + IT N+ + HFDL+ F +A+ +AG + + +RRV C+ G + T + ++ +LV AG G+IV Sbjct: 15 GSKWLEARATFYGSNPRGAAPDDHGGACGYKDVDKPPFDGMTACGNEPIFKDGLGCRACYEIKC-KEPVECSGEPVLVKITDKNY--------------EHIAAYHFDLSGKAFGAMAKKGQEDKLRKAGELTLQFRRVKCKYPSGTKITFHIEKGSNDHYLALLVKYAAGDGNIV 175 The following BLAST results are available for this feature:
BLAST of FC920425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920425 ID=FC920425; Name=FC920425; organism=Citrus clementina; type=EST; length=649bpback to top |