FC920493

Overview
NameFC920493
Unique NameFC920493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920493_ssr39 microsatellite FC920493_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14100 contig Ccv1_Contig14100:2..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 52/141 (36.88%), Postives = 65/141 (46.10%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR ++L  G L   E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 50/141 (35.46%), Postives = 64/141 (45.39%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        + P YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLG 145
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 50/141 (35.46%), Postives = 64/141 (45.39%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        + P YLTGE PG+                                      YG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLG 145
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 52/141 (36.88%), Postives = 63/141 (44.68%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYG DR  FL        + P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLG 146
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 52/142 (36.62%), Postives = 64/142 (45.07%), Query Frame = 3 
Query:  282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            ++YGP+R  +L  G    +  P YLTGE PG+                                      YG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGD--------------------------------------YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLG 135
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 50/141 (35.46%), Postives = 64/141 (45.39%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 51/141 (36.17%), Postives = 62/141 (43.97%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE P +                                      YG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLG 149
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 50/141 (35.46%), Postives = 64/141 (45.39%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 144
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 50/141 (35.46%), Postives = 64/141 (45.39%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 137
[Close]
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 50/141 (35.46%), Postives = 63/141 (44.68%), Query Frame = 3 
Query:  285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707
            WYGPDR  +L        E P YLTGE PG+                                      YG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146
The following BLAST results are available for this feature:
BLAST of FC920493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CB22_MAIZE2.144e-1536.88Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ2.800e-1535.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.800e-1535.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI3.657e-1536.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE6.239e-1536.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOYBN6.239e-1535.46Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_PETSP6.239e-1536.17Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_MAIZE6.239e-1535.46Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA6.239e-1535.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR8.148e-1535.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32009B04EF RVDevelop1 Citrus clementina cDNA clone C32009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920493 ID=FC920493; Name=FC920493; organism=Citrus clementina; type=EST; length=744bp
ACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGC
AACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTC
CATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTG
TTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTT
GCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGT
CGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACC
GAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAG
TACTTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCCT
TCAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTT
AAAACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTA
CTTCGGAAAGAACATCCCAATCAACCCTTGTTTTGCTGTCATTG
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