FC920493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 9.492e-64 Identity = 128/214 (59.81%), Postives = 142/214 (66.36%), Query Frame = 3 Query: 102 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINPCFAVI 743 +GV EMLG PLN + R+SAP AS+PSTFK VALF ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G+ YGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN AV+ Sbjct: 4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV 176
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17 Identity = 51/142 (35.92%), Postives = 66/142 (46.48%), Query Frame = 3 Query: 282 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 ++YGPDR FL G ++ PEYLTGE PG+ YG+D GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA + LNY G Sbjct: 32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGD--------------------------------------YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLG 133
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR +L +IP YLTGE PG+ YG+D GLS P+ F+K + E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G Sbjct: 49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR ++L E P YLTGE PG+ YG+D GLS P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G Sbjct: 58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR ++L E P YLTGE PG+ YG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G Sbjct: 62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15 Identity = 52/141 (36.88%), Postives = 66/141 (46.81%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR ++L G L E P YLTGE PG+ YG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR ++L E P YLTGE PG+ YG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G Sbjct: 62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR +L E P YLTGE PG+ YG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G Sbjct: 52 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 150
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 51/141 (36.17%), Postives = 63/141 (44.68%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR +L E P YLTGE PG+ YG+D GLS P+ F+K + E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
BLAST of FC920493 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15 Identity = 51/141 (36.17%), Postives = 64/141 (45.39%), Query Frame = 3 Query: 285 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 707 WYGPDR +L E P YLTGE PG+ YG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G Sbjct: 53 WYGPDRVKYLGPF---SGESPSYLTGEFPGD--------------------------------------YGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 151 The following BLAST results are available for this feature:
BLAST of FC920493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920493 ID=FC920493; Name=FC920493; organism=Citrus clementina; type=EST; length=744bpback to top |